/Users/scottcain/.local/share/uv/tools/planemo/lib/python3.13/site-packages/pydantic/_internal/_generate_schema.py:2249: UnsupportedFieldAttributeWarning: The 'default' attribute with value None was provided to the `Field()` function, which has no effect in the context it was used. 'default' is field-specific metadata, and can only be attached to a model field using `Annotated` metadata or by assignment. This may have happened because an `Annotated` type alias using the `type` statement was used, or if the `Field()` function was attached to a single member of a union type. warnings.warn( git --git-dir /Users/scottcain/.planemo/gx_repo config remote.origin.fetch '+refs/*:refs/*' git --git-dir /Users/scottcain/.planemo/gx_repo config remote.origin.mirror true git --git-dir /Users/scottcain/.planemo/gx_repo remote update >/dev/null 2>&1 galaxy.util.commands WARNING: Passing program arguments as a string may be a security hazard if combined with untrusted input git clone --branch master --depth 1 file:///Users/scottcain/.planemo/gx_repo /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev Cloning into '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev'... if [ -d .venv ]; then GALAXY_VIRTUAL_ENV=.venv; else GALAXY_VIRTUAL_ENV=/Users/scottcain/.planemo/gx_venv_3; fi && export GALAXY_VIRTUAL_ENV && if [ ! -e "$GALAXY_VIRTUAL_ENV" ]; then /opt/homebrew/Caskroom/miniconda/base/bin/python3 -m venv $GALAXY_VIRTUAL_ENV; echo "Created virtualenv"; fi && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then . "$GALAXY_VIRTUAL_ENV"/bin/activate; echo "Activated a virtualenv for Galaxy"; echo "$VIRTUAL_ENV"; else echo "Failed to activate virtualenv."; fi && ./scripts/common_startup.sh ${COMMON_STARTUP_ARGS} galaxy.util.commands WARNING: Passing program arguments as a string may be a security hazard if combined with untrusted input Activated a virtualenv for Galaxy /Users/scottcain/.planemo/gx_venv_3 Initializing tool-data/shared/ucsc/builds.txt from builds.txt.sample Initializing tool-data/shared/ucsc/manual_builds.txt from manual_builds.txt.sample Activating Conda environment: _galaxy_ Activating virtualenv at /Users/scottcain/.planemo/gx_venv_3 Using Python 3.13.5 environment at: /Users/scottcain/.planemo/gx_venv_3 Audited 313 packages in 166ms Trying to resolve path for the 'email_ban_file' option but it's empty/None Using Python 3.13.5 environment at: /Users/scottcain/.planemo/gx_venv_3 Using Python 3.13.5 environment at: /Users/scottcain/.planemo/gx_venv_3 Audited 1 package in 15ms The Galaxy client build is being skipped due to the SKIP_CLIENT_BUILD environment variable. Starting Galaxy with command [cd /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev && if [ -d .venv ]; then GALAXY_VIRTUAL_ENV=.venv; else GALAXY_VIRTUAL_ENV=/Users/scottcain/.planemo/gx_venv_3; fi && export GALAXY_VIRTUAL_ENV && if [ ! -e "$GALAXY_VIRTUAL_ENV" ]; then /opt/homebrew/Caskroom/miniconda/base/bin/python3 -m venv $GALAXY_VIRTUAL_ENV; echo "Created virtualenv"; fi && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then . "$GALAXY_VIRTUAL_ENV"/bin/activate; echo "Activated a virtualenv for Galaxy"; echo "$VIRTUAL_ENV"; else echo "Failed to activate virtualenv."; fi && /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/run.sh $COMMON_STARTUP_ARGS --server-name main] Activating Conda environment: _galaxy_ Activating virtualenv at /Users/scottcain/.planemo/gx_venv_3 Using Python 3.13.5 environment at: /Users/scottcain/.planemo/gx_venv_3 Audited 313 packages in 75ms Option master_api_key has been deprecated in favor of bootstrap_admin_api_key Trying to resolve path for the 'email_ban_file' option but it's empty/None Trying to resolve path for the 'data_manager_config_file' option but it's empty/None Using Python 3.13.5 environment at: /Users/scottcain/.planemo/gx_venv_3 Using Python 3.13.5 environment at: /Users/scottcain/.planemo/gx_venv_3 Audited 2 packages in 7ms The Galaxy client build is being skipped due to the SKIP_CLIENT_BUILD environment variable. Activating Conda environment: _galaxy_ Activating virtualenv at /Users/scottcain/.planemo/gx_venv_3 Executing: galaxy Working directory: /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy.yml celery --app galaxy.celery worker --concurrency 2 --loglevel DEBUG --pool threads --queues celery,galaxy.internal,galaxy.external Working directory: /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy.yml celery --app galaxy.celery beat --loglevel DEBUG --schedule /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/gravity/celerybeat-schedule Working directory: /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev Executing: npm_config_yes=true npx @galaxyproject/gx-it-proxy@>=0.0.6 --ip localhost --port 55157 --sessions /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/database/interactivetools_map.sqlite --verbose --proxyPathPrefix /interactivetool/ep Working directory: /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy.yml OBJC_DISABLE_INITIALIZE_FORK_SAFETY=YES gunicorn 'galaxy.webapps.galaxy.fast_factory:factory()' --timeout 300 --pythonpath lib -k galaxy.webapps.galaxy.workers.Worker -b localhost:55124 --workers=1 --config python:galaxy.web_stack.gunicorn_config --no-control-socket Watching path /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/database/interactivetools_map.sqlite Listening on localhost:55157 Option master_api_key has been deprecated in favor of bootstrap_admin_api_key Option master_api_key has been deprecated in favor of bootstrap_admin_api_key Trying to resolve path for the 'email_ban_file' option but it's empty/None Trying to resolve path for the 'email_ban_file' option but it's empty/None Trying to resolve path for the 'data_manager_config_file' option but it's empty/None Trying to resolve path for the 'data_manager_config_file' option but it's empty/None [2026-09-17 11:49:37 -0500] [87527] [INFO] Starting gunicorn 26.0.0 [2026-09-17 11:49:37 -0500] [87527] [INFO] Listening at: http://127.0.0.1:55124 (87527) [2026-09-17 11:49:37 -0500] [87527] [INFO] Using worker: galaxy.webapps.galaxy.workers.Worker [2026-09-17 11:49:37 -0500] [87561] [INFO] Booting worker with pid: 87561 [2026-09-17 11:49:40,421: DEBUG/MainProcess] | Worker: Preparing bootsteps. [2026-09-17 11:49:40,423: DEBUG/MainProcess] | Worker: Building graph... [2026-09-17 11:49:40,423: DEBUG/MainProcess] | Worker: New boot order: {Timer, Hub, Pool, Autoscaler, StateDB, Beat, Consumer} [2026-09-17 11:49:40,428: DEBUG/MainProcess] | Consumer: Preparing bootsteps. [2026-09-17 11:49:40,429: DEBUG/MainProcess] | Consumer: Building graph... [2026-09-17 11:49:40,431: DEBUG/MainProcess] Setting default socket timeout to 30 [2026-09-17 11:49:40,431: INFO/MainProcess] beat: Starting... [2026-09-17 11:49:40,438: DEBUG/MainProcess] | Consumer: New boot order: {Connection, Events, Heart, Mingle, Tasks, Control, Gossip, Agent, DelayedDelivery, event loop} [2026-09-17 11:49:40,455: DEBUG/MainProcess] Current schedule: [2026-09-17 11:49:40,455: DEBUG/MainProcess] beat: Ticking with max interval->5.00 minutes [2026-09-17 11:49:40,455: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. Option master_api_key has been deprecated in favor of bootstrap_admin_api_key Trying to resolve path for the 'email_ban_file' option but it's empty/None Trying to resolve path for the 'data_manager_config_file' option but it's empty/None -------------- celery@e1-055847.science.psu.edu v5.6.3 (recovery) --- ***** ----- -- ******* ---- macOS-26.6.2-arm64-arm-64bit-Mach-O 2026-09-17 11:49:40 - *** --- * --- - ** ---------- [config] - ** ---------- .> app: galaxy:0x12899d7f0 - ** ---------- .> transport: sqlalchemy+sqlite:////private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/celery_broker.sqlite - ** ---------- .> results: sqlite:////private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/database/results.sqlite - *** --- * --- .> concurrency: 2 (thread) -- ******* ---- .> task events: OFF (enable -E to monitor tasks in this worker) --- ***** ----- -------------- [queues] .> celery exchange=celery(direct) key=celery .> galaxy.external exchange=galaxy.external(direct) key=galaxy.external .> galaxy.internal exchange=galaxy.internal(direct) key=galaxy.internal [tasks] . celery.accumulate . celery.backend_cleanup . celery.chain . celery.chord . celery.chord_unlock . celery.chunks . celery.group . celery.map . celery.starmap . galaxy.bulk_move_storage . galaxy.change_datatype . galaxy.clean_object_store_caches . galaxy.cleanup_expired_notifications . galaxy.cleanup_jwds . galaxy.cleanup_short_term_storage . galaxy.cleanup_stale_concurrency_slots . galaxy.compute_dataset_hash . galaxy.dispatch_pending_notifications . galaxy.emit_queue_metrics_task . galaxy.execute_workflow_completion_hook . galaxy.export_history . galaxy.fetch_data . galaxy.finish_job . galaxy.import_data_bundle . galaxy.import_model_store . galaxy.materialize . galaxy.prepare_dataset_collection_download . galaxy.prepare_history_content_download . galaxy.prepare_history_download . galaxy.prepare_invocation_download . galaxy.prepare_pdf_download . galaxy.prune_expired_bulk_storage_operations . galaxy.prune_history_audit_table . galaxy.prune_kombu_sqla_transport . galaxy.purge_datasets . galaxy.purge_hda . galaxy.purge_history_datasets . galaxy.queue_jobs . galaxy.recalculate_user_disk_usage . galaxy.recover_stale_bulk_storage_operation_runs . galaxy.refresh_gtn_database . galaxy.refresh_iwc_manifest . galaxy.renew_vault_token . galaxy.send_notification_to_recipients_async . galaxy.set_job_metadata . galaxy.set_metadata . galaxy.setup_fetch_data . galaxy.touch . galaxy.write_history_content_to . galaxy.write_history_to . galaxy.write_invocation_to [2026-09-17 11:49:40,479: DEBUG/MainProcess] | Worker: Starting Pool [2026-09-17 11:49:40,479: DEBUG/MainProcess] ^-- substep ok [2026-09-17 11:49:40,479: DEBUG/MainProcess] | Worker: Starting Consumer [2026-09-17 11:49:40,479: DEBUG/MainProcess] | Consumer: Starting Connection [2026-09-17 11:49:40,481: INFO/MainProcess] Connected to sqlalchemy+sqlite:////private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/celery_broker.sqlite [2026-09-17 11:49:40,481: DEBUG/MainProcess] ^-- substep ok [2026-09-17 11:49:40,481: DEBUG/MainProcess] | Consumer: Starting Events [2026-09-17 11:49:40,481: DEBUG/MainProcess] ^-- substep ok [2026-09-17 11:49:40,481: DEBUG/MainProcess] | Consumer: Starting Heart [2026-09-17 11:49:40,481: DEBUG/MainProcess] ^-- substep ok [2026-09-17 11:49:40,481: DEBUG/MainProcess] | Consumer: Starting Tasks [2026-09-17 11:49:40,497: DEBUG/MainProcess] ^-- substep ok [2026-09-17 11:49:40,497: DEBUG/MainProcess] | Consumer: Starting event loop [2026-09-17 11:49:40,497: INFO/MainProcess] celery@e1-055847.science.psu.edu ready. DEBUG:yacman.yacman:Using yacman version 1.0.0 /Users/scottcain/.planemo/gx_venv_3/lib/python3.13/site-packages/paste/urlparser.py:15: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources DEBUG:galaxy.app:python path is: /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev, /Users/scottcain/.planemo/gx_venv_3/bin, /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/lib, /opt/homebrew/Caskroom/miniconda/base/lib/python313.zip, /opt/homebrew/Caskroom/miniconda/base/lib/python3.13, /opt/homebrew/Caskroom/miniconda/base/lib/python3.13/lib-dynload, /Users/scottcain/.planemo/gx_venv_3/lib/python3.13/site-packages, /Users/scottcain/.planemo/gx_venv_3/lib/python3.13/site-packages/setuptools/_vendor DEBUG:galaxy.config:Configuration directory is /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz DEBUG:galaxy.config:Data directory is /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/database DEBUG:galaxy.config:Managed config directory is /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz WARNING:galaxy.config:Option master_api_key has been deprecated in favor of bootstrap_admin_api_key WARNING:galaxy.config:Trying to resolve path for the 'email_ban_file' option but it's empty/None WARNING:galaxy.config:Trying to resolve path for the 'data_manager_config_file' option but it's empty/None DEBUG:galaxy.config:No extra version JSON file detected at /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/version.json INFO:galaxy.model.migrations:Creating database for URI [sqlite:////private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy.sqlite?isolation_level=IMMEDIATE] INFO:alembic.runtime.migration:Context impl SQLiteImpl. INFO:alembic.runtime.migration:Will assume non-transactional DDL. INFO:alembic.runtime.migration:Running stamp_revision -> fac9c76612f9 DEBUG:alembic.runtime.migration:new branch insert fac9c76612f9 INFO:alembic.runtime.migration:Context impl SQLiteImpl. INFO:alembic.runtime.migration:Will assume non-transactional DDL. INFO:alembic.runtime.migration:Running stamp_revision -> d4a650f47a3c DEBUG:alembic.runtime.migration:new branch insert d4a650f47a3c INFO:galaxy.app:Install database targeting Galaxy's database configuration. DEBUG:galaxy.web_stack:GunicornApplicationStack initialized galaxy.web_stack.handlers INFO 2026-09-17 11:49:42,207 [pN:main,p:87561,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_TRANSACTION_ISOLATION', set the `assign_with` attribute on to override the default galaxy.jobs INFO 2026-09-17 11:49:42,208 [pN:main,p:87561,tN:MainThread] Job handler assignment methods set to: db-transaction-isolation galaxy.config.url_headers WARNING 2026-09-17 11:49:42,209 [pN:main,p:87561,tN:MainThread] URL headers configuration file not found: /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/url_headers_conf.yml. Using null configuration. galaxy.queue_worker INFO 2026-09-17 11:49:42,209 [pN:main,p:87561,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/celery_broker.sqlite galaxy.datatypes.registry ERROR 2026-09-17 11:49:42,771 [pN:main,p:87561,tN:MainThread] Error importing datatype module galaxy.datatypes.html Traceback (most recent call last): File "/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/lib/galaxy/datatypes/registry.py", line 235, in load_datatypes module = __import__(datatype_module) ModuleNotFoundError: No module named 'galaxy.datatypes.html' galaxy.visualization.genomes ERROR 2026-09-17 11:49:43,043 [pN:main.1,p:87561,tN:MainThread] Error reading twobit.loc Traceback (most recent call last): File "/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/lib/galaxy/visualization/genomes.py", line 225, in reload_genomes with open(twobit_path) as f: ~~~~^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/tool-data/twobit.loc' galaxy.util WARNING 2026-09-17 11:49:43,109 [pN:main.1,p:87561,tN:MainThread] directory not found: /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/config/plugins/activities galaxy.tools WARNING 2026-09-17 11:49:43,110 [pN:main.1,p:87561,tN:MainThread] The default shed tool config file (/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 11:49:43,110 [pN:main.1,p:87561,tN:MainThread] Parsing the tool configuration /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/tool_conf.xml galaxy.tools WARNING 2026-09-17 11:49:43,150 [pN:main.1,p:87561,tN:MainThread] The default shed tool config file (/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 11:49:43,150 [pN:main.1,p:87561,tN:MainThread] Parsing the tool configuration /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tools_conf.xml galaxy.tools WARNING 2026-09-17 11:49:43,151 [pN:main.1,p:87561,tN:MainThread] The default shed tool config file (/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 11:49:43,151 [pN:main.1,p:87561,tN:MainThread] Parsing the tool configuration /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/empty_tool_conf.xml galaxy.tools.search WARNING 2026-09-17 11:49:45,125 [pN:main.1,p:87561,tN:MainThread] Index at '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/database/tool_search_index/default' uses outdated schema, creating a new index galaxy.tools.search WARNING 2026-09-17 11:49:45,139 [pN:main.1,p:87561,tN:MainThread] Index at '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/database/tool_search_index/my_panel' uses outdated schema, creating a new index galaxy.tools.search WARNING 2026-09-17 11:49:45,144 [pN:main.1,p:87561,tN:MainThread] Index at '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/database/tool_search_index/ontology:edam_operations' uses outdated schema, creating a new index galaxy.tools.search WARNING 2026-09-17 11:49:45,151 [pN:main.1,p:87561,tN:MainThread] Index at '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/database/tool_search_index/ontology:edam_topics' uses outdated schema, creating a new index galaxy.datatypes.display_applications.application ERROR 2026-09-17 11:49:45,175 [pN:main.1,p:87561,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.display_applications.application ERROR 2026-09-17 11:49:45,180 [pN:main.1,p:87561,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". galaxy.datatypes.display_applications.application ERROR 2026-09-17 11:49:45,199 [pN:main.1,p:87561,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". galaxy.datatypes.display_applications.application ERROR 2026-09-17 11:49:45,205 [pN:main.1,p:87561,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.display_applications.application ERROR 2026-09-17 11:49:45,215 [pN:main.1,p:87561,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.display_applications.application ERROR 2026-09-17 11:49:45,229 [pN:main.1,p:87561,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.display_applications.application ERROR 2026-09-17 11:49:45,233 [pN:main.1,p:87561,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.display_applications.application ERROR 2026-09-17 11:49:45,234 [pN:main.1,p:87561,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.display_applications.application ERROR 2026-09-17 11:49:45,243 [pN:main.1,p:87561,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.display_applications.application ERROR 2026-09-17 11:49:45,248 [pN:main.1,p:87561,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". galaxy.datatypes.display_applications.application ERROR 2026-09-17 11:49:45,252 [pN:main.1,p:87561,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.display_applications.application ERROR 2026-09-17 11:49:45,257 [pN:main.1,p:87561,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.display_applications.application ERROR 2026-09-17 11:49:45,258 [pN:main.1,p:87561,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". galaxy.datatypes.display_applications.application ERROR 2026-09-17 11:49:45,260 [pN:main.1,p:87561,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.display_applications.application ERROR 2026-09-17 11:49:45,261 [pN:main.1,p:87561,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.display_applications.application ERROR 2026-09-17 11:49:45,262 [pN:main.1,p:87561,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.visualization.plugins.registry INFO 2026-09-17 11:49:45,614 [pN:main.1,p:87561,tN:MainThread] VisualizationsRegistry, loaded plugin: example galaxy.tours._impl INFO 2026-09-17 11:49:45,620 [pN:main.1,p:87561,tN:MainThread] Loaded tour 'core.galaxy_ui' galaxy.tours._impl INFO 2026-09-17 11:49:45,624 [pN:main.1,p:87561,tN:MainThread] Loaded tour 'core.deferred' galaxy.tours._impl INFO 2026-09-17 11:49:45,632 [pN:main.1,p:87561,tN:MainThread] Loaded tour 'core.windows' galaxy.tours._impl INFO 2026-09-17 11:49:45,635 [pN:main.1,p:87561,tN:MainThread] Loaded tour 'core.visualizations' galaxy.tours._impl INFO 2026-09-17 11:49:45,645 [pN:main.1,p:87561,tN:MainThread] Loaded tour 'core.history' galaxy.workflow.scheduling_manager INFO 2026-09-17 11:49:45,698 [pN:main.1,p:87561,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. galaxy.web_stack.handlers INFO 2026-09-17 11:49:45,698 [pN:main.1,p:87561,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_TRANSACTION_ISOLATION', set the `assign_with` attribute on to override the default galaxy.jobs.handler INFO 2026-09-17 11:49:45,702 [pN:main.1,p:87561,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_TRANSACTION_ISOLATION' assignment method for handler 'main.1', tag(s): None, _default_ galaxy.workflow.completion_hooks INFO 2026-09-17 11:49:45,715 [pN:main.1,p:87561,tN:MainThread] Enabling workflow completion hook: send_notification galaxy.workflow.completion_hooks INFO 2026-09-17 11:49:45,715 [pN:main.1,p:87561,tN:MainThread] Enabling workflow completion hook: export_to_file_source galaxy.workflow.completion_monitor INFO 2026-09-17 11:49:45,715 [pN:main.1,p:87561,tN:MainThread] Starting workflow completion monitor galaxy.jobs INFO 2026-09-17 11:49:45,716 [pN:main.1,p:87561,tN:MainThread] Handler 'main.1' will load all configured runner plugins galaxy.jobs.handler INFO 2026-09-17 11:49:45,735 [pN:main.1,p:87561,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_TRANSACTION_ISOLATION' assignment method for handler 'main.1', tag(s): galaxy.jobs.handler INFO 2026-09-17 11:49:45,736 [pN:main.1,p:87561,tN:MainThread] job handler queue started galaxy.jobs.handler INFO 2026-09-17 11:49:45,736 [pN:main.1,p:87561,tN:MainThread] job handler stop queue started galaxy.queue_worker INFO 2026-09-17 11:49:45,737 [pN:main.1,p:87561,tN:MainThread] Binding and starting galaxy control worker for main.1 galaxy.queue_worker INFO 2026-09-17 11:49:45,739 [pN:main.1,p:87561,tN:MainThread] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.app INFO 2026-09-17 11:49:45,757 [pN:main.1,p:87561,tN:MainThread] Galaxy app startup finished (4227.984 ms) galaxy.queue_worker INFO 2026-09-17 11:49:45,759 [pN:main.1,p:87561,tN:Thread-2] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. galaxy.web_stack INFO 2026-09-17 11:49:50,090 [pN:main.1,p:87561,tN:MainThread] Galaxy server instance 'main.1' is running Serving on http://127.0.0.1:55124 ephemeris.shed_tools WARNING: 'tool_shed' not a valid key. Will be skipped during parsing ephemeris.shed_tools WARNING: 'tool_shed' not a valid key. Will be skipped during parsing ephemeris.shed_tools WARNING: 'tool_shed' not a valid key. Will be skipped during parsing ephemeris.shed_tools WARNING: 'tool_shed' not a valid key. Will be skipped during parsing ephemeris.shed_tools WARNING: 'tool_shed' not a valid key. Will be skipped during parsing [2026-09-17 11:49:53 -0500] [87561] [INFO] Started server process [87561] [2026-09-17 11:49:53 -0500] [87561] [INFO] Waiting for application startup. [2026-09-17 11:49:53 -0500] [87561] [INFO] Application startup complete. uvicorn.access INFO 2026-09-17 11:49:53,705 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55257 - "GET /api/version HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:49:53,729 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55259 - "GET /api/tools?in_panel=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:49:53,733 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55261 - "GET /api/tools?in_panel=False HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:49:53,739 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55263 - "GET /api/tool_shed_repositories HTTP/1.1" 200 galaxy.tool_shed.galaxy_install.install_manager INFO 2026-09-17 11:49:55,579 [pN:main.1,p:87561,tN:WSGI_0] Cloning repository 'https://toolshed.g2.bx.psu.edu/repos/nml/collapse_collections' at 7:90981f86000f galaxy.queue_worker INFO 2026-09-17 11:49:57,596 [pN:main.1,p:87561,tN:Thread-5 (check)] Queuing sync task reload_toolbox for main.1. galaxy.queue_worker INFO 2026-09-17 11:49:58,316 [pN:main.1,p:87561,tN:Thread-2] Instance 'main.1' received 'reload_toolbox' task, executing now. galaxy.util WARNING 2026-09-17 11:49:58,317 [pN:main.1,p:87561,tN:Thread-2] directory not found: /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/config/plugins/activities galaxy.tools WARNING 2026-09-17 11:49:58,321 [pN:main.1,p:87561,tN:Thread-2] The default shed tool config file (/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 11:49:58,321 [pN:main.1,p:87561,tN:Thread-2] Parsing the tool configuration /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/tool_conf.xml galaxy.tools WARNING 2026-09-17 11:49:58,326 [pN:main.1,p:87561,tN:Thread-2] The default shed tool config file (/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 11:49:58,326 [pN:main.1,p:87561,tN:Thread-2] Parsing the tool configuration /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tools_conf.xml galaxy.tools WARNING 2026-09-17 11:49:58,326 [pN:main.1,p:87561,tN:Thread-2] The default shed tool config file (/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 11:49:58,327 [pN:main.1,p:87561,tN:Thread-2] Parsing the tool configuration /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/empty_tool_conf.xml galaxy.queue_worker INFO 2026-09-17 11:49:58,343 [pN:main.1,p:87561,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.queue_worker INFO 2026-09-17 11:49:58,351 [pN:main.1,p:87561,tN:Thread-2] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. uvicorn.access INFO 2026-09-17 11:49:58,446 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55265 - "POST /api/tool_shed_repositories/new/install_repository_revision HTTP/1.1" 200 galaxy.queue_worker INFO 2026-09-17 11:49:58,609 [pN:main.1,p:87561,tN:Thread-5 (check)] Sending reload_toolbox control task. galaxy.tool_shed.galaxy_install.install_manager INFO 2026-09-17 11:49:59,878 [pN:main.1,p:87561,tN:WSGI_0] Cloning repository 'https://toolshed.g2.bx.psu.edu/repos/iuc/kmindex' at 5:b6fa25b6b436 galaxy.queue_worker INFO 2026-09-17 11:50:02,643 [pN:main.1,p:87561,tN:Thread-5 (check)] Queuing sync task reload_toolbox for main.1. galaxy.queue_worker INFO 2026-09-17 11:50:03,565 [pN:main.1,p:87561,tN:Thread-2] Instance 'main.1' received 'reload_toolbox' task, executing now. galaxy.util WARNING 2026-09-17 11:50:03,566 [pN:main.1,p:87561,tN:Thread-2] directory not found: /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/config/plugins/activities galaxy.tools WARNING 2026-09-17 11:50:03,579 [pN:main.1,p:87561,tN:Thread-2] The default shed tool config file (/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 11:50:03,579 [pN:main.1,p:87561,tN:Thread-2] Parsing the tool configuration /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/tool_conf.xml galaxy.tools WARNING 2026-09-17 11:50:03,582 [pN:main.1,p:87561,tN:Thread-2] The default shed tool config file (/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 11:50:03,583 [pN:main.1,p:87561,tN:Thread-2] Parsing the tool configuration /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tools_conf.xml galaxy.tools WARNING 2026-09-17 11:50:03,584 [pN:main.1,p:87561,tN:Thread-2] The default shed tool config file (/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 11:50:03,584 [pN:main.1,p:87561,tN:Thread-2] Parsing the tool configuration /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/empty_tool_conf.xml galaxy.queue_worker INFO 2026-09-17 11:50:03,596 [pN:main.1,p:87561,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.queue_worker INFO 2026-09-17 11:50:03,603 [pN:main.1,p:87561,tN:Thread-2] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. uvicorn.access INFO 2026-09-17 11:50:03,642 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55274 - "POST /api/tool_shed_repositories/new/install_repository_revision HTTP/1.1" 200 galaxy.queue_worker INFO 2026-09-17 11:50:03,656 [pN:main.1,p:87561,tN:Thread-5 (check)] Sending reload_toolbox control task. galaxy.tool_shed.galaxy_install.repository_dependencies.repository_dependency_manager INFO 2026-09-17 11:50:04,798 [pN:main.1,p:87561,tN:WSGI_0] Skipping installation of revision 90981f86000f of repository 'collapse_collections' because it was installed with the (possibly updated) revision 90981f86000f and its current installation status is 'Installed'. uvicorn.access INFO 2026-09-17 11:50:04,799 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55303 - "POST /api/tool_shed_repositories/new/install_repository_revision HTTP/1.1" 200 galaxy.tool_shed.galaxy_install.install_manager INFO 2026-09-17 11:50:06,223 [pN:main.1,p:87561,tN:WSGI_0] Cloning repository 'https://toolshed.g2.bx.psu.edu/repos/iuc/lexicmap' at 7:bcb6caec41eb galaxy.queue_worker INFO 2026-09-17 11:50:08,739 [pN:main.1,p:87561,tN:Thread-5 (check)] Queuing sync task reload_toolbox for main.1. galaxy.queue_worker INFO 2026-09-17 11:50:08,970 [pN:main.1,p:87561,tN:Thread-2] Instance 'main.1' received 'reload_toolbox' task, executing now. galaxy.util WARNING 2026-09-17 11:50:08,972 [pN:main.1,p:87561,tN:Thread-2] directory not found: /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/config/plugins/activities galaxy.tools WARNING 2026-09-17 11:50:08,985 [pN:main.1,p:87561,tN:Thread-2] The default shed tool config file (/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 11:50:08,986 [pN:main.1,p:87561,tN:Thread-2] Parsing the tool configuration /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/tool_conf.xml galaxy.tools WARNING 2026-09-17 11:50:08,989 [pN:main.1,p:87561,tN:Thread-2] The default shed tool config file (/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 11:50:08,989 [pN:main.1,p:87561,tN:Thread-2] Parsing the tool configuration /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tools_conf.xml galaxy.tools WARNING 2026-09-17 11:50:08,990 [pN:main.1,p:87561,tN:Thread-2] The default shed tool config file (/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 11:50:08,990 [pN:main.1,p:87561,tN:Thread-2] Parsing the tool configuration /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/empty_tool_conf.xml galaxy.queue_worker INFO 2026-09-17 11:50:09,005 [pN:main.1,p:87561,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.queue_worker INFO 2026-09-17 11:50:09,013 [pN:main.1,p:87561,tN:Thread-2] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. uvicorn.access INFO 2026-09-17 11:50:09,140 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55309 - "POST /api/tool_shed_repositories/new/install_repository_revision HTTP/1.1" 200 galaxy.queue_worker INFO 2026-09-17 11:50:09,760 [pN:main.1,p:87561,tN:Thread-5 (check)] Sending reload_toolbox control task. galaxy.tool_shed.galaxy_install.install_manager INFO 2026-09-17 11:50:10,458 [pN:main.1,p:87561,tN:WSGI_0] Cloning repository 'https://toolshed.g2.bx.psu.edu/repos/iuc/collection_column_join' at 5:3ddd99c7efee galaxy.queue_worker INFO 2026-09-17 11:50:12,788 [pN:main.1,p:87561,tN:Thread-5 (check)] Queuing sync task reload_toolbox for main.1. galaxy.queue_worker INFO 2026-09-17 11:50:13,254 [pN:main.1,p:87561,tN:Thread-2] Instance 'main.1' received 'reload_toolbox' task, executing now. galaxy.util WARNING 2026-09-17 11:50:13,256 [pN:main.1,p:87561,tN:Thread-2] directory not found: /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/config/plugins/activities galaxy.tools WARNING 2026-09-17 11:50:13,268 [pN:main.1,p:87561,tN:Thread-2] The default shed tool config file (/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 11:50:13,268 [pN:main.1,p:87561,tN:Thread-2] Parsing the tool configuration /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/tool_conf.xml galaxy.tools WARNING 2026-09-17 11:50:13,273 [pN:main.1,p:87561,tN:Thread-2] The default shed tool config file (/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 11:50:13,274 [pN:main.1,p:87561,tN:Thread-2] Parsing the tool configuration /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tools_conf.xml galaxy.tools WARNING 2026-09-17 11:50:13,275 [pN:main.1,p:87561,tN:Thread-2] The default shed tool config file (/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 11:50:13,276 [pN:main.1,p:87561,tN:Thread-2] Parsing the tool configuration /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/empty_tool_conf.xml galaxy.queue_worker INFO 2026-09-17 11:50:13,302 [pN:main.1,p:87561,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.queue_worker INFO 2026-09-17 11:50:13,318 [pN:main.1,p:87561,tN:Thread-2] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. galaxy.queue_worker INFO 2026-09-17 11:50:13,808 [pN:main.1,p:87561,tN:Thread-5 (check)] Sending reload_toolbox control task. Retrieving notices: ...working... done Channels: - conda-forge - bioconda Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed PackagesNotFoundError: The following packages are not available from current channels: - coreutils=8.25 Current channels: - https://conda.anaconda.org/conda-forge - https://conda.anaconda.org/bioconda To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page. Retrieving notices: ...working... done Channels: - conda-forge - bioconda Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed PackagesNotFoundError: The following packages are not available from current channels: - coreutils=8.25 Current channels: - https://conda.anaconda.org/conda-forge - https://conda.anaconda.org/bioconda To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page. Retrieving notices: ...working... done Channels: - conda-forge - bioconda Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed PackagesNotFoundError: The following packages are not available from current channels: - coreutils=8.25 Current channels: - https://conda.anaconda.org/conda-forge - https://conda.anaconda.org/bioconda To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page. Retrieving notices: ...working... done Channels: - conda-forge - bioconda Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed PackagesNotFoundError: The following packages are not available from current channels: - coreutils=8.25 Current channels: - https://conda.anaconda.org/conda-forge - https://conda.anaconda.org/bioconda To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page. Retrieving notices: ...working... done Channels: - conda-forge - bioconda Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed PackagesNotFoundError: The following packages are not available from current channels: - coreutils=8.25 Current channels: - https://conda.anaconda.org/conda-forge - https://conda.anaconda.org/bioconda To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page. Retrieving notices: ...working... done Channels: - conda-forge - bioconda Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed PackagesNotFoundError: The following packages are not available from current channels: - coreutils=8.25 Current channels: - https://conda.anaconda.org/conda-forge - https://conda.anaconda.org/bioconda To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page. Retrieving notices: ...working... done Channels: - conda-forge - bioconda Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed PackagesNotFoundError: The following packages are not available from current channels: - coreutils=8.25 Current channels: - https://conda.anaconda.org/conda-forge - https://conda.anaconda.org/bioconda To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page. Retrieving notices: ...working... done Channels: - conda-forge - bioconda Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed PackagesNotFoundError: The following packages are not available from current channels: - coreutils=8.25 Current channels: - https://conda.anaconda.org/conda-forge - https://conda.anaconda.org/bioconda To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page. uvicorn.access INFO 2026-09-17 11:50:43,834 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55321 - "POST /api/tool_shed_repositories/new/install_repository_revision HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:43,842 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55376 - "GET /api/users HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:43,847 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55378 - "GET /api/configuration HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:43,890 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55380 - "POST /api/users HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:43,899 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55382 - "POST /api/users/961e7c4742a92de4/api_key HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:43,969 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55384 - "POST /api/workflows/upload HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:43,999 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55386 - "POST /api/histories HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:44,001 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55388 - "GET /api/version HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:44,006 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55390 - "GET /api/configuration HTTP/1.1" 200 galaxy.tools INFO 2026-09-17 11:50:44,015 [pN:main.1,p:87561,tN:AnyIO worker thread] Validated and populated state for tool request (0.063 ms) uvicorn.access INFO 2026-09-17 11:50:44,079 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55392 - "POST /api/tools/fetch HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:44,096 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55394 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:44,381 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55396 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:44,662 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55398 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 [2026-09-17 11:50:44,894: INFO/MainProcess] Task galaxy.setup_fetch_data[1cd9ec32-8b60-4637-a3cf-02c25d1df75a] received [2026-09-17 11:50:44,895: DEBUG/MainProcess] TaskPool: Apply (args:('galaxy.setup_fetch_data', '1cd9ec32-8b60-4637-a3cf-02c25d1df75a', {'lang': 'py', 'task': 'galaxy.setup_fetch_data', 'id': '1cd9ec32-8b60-4637-a3cf-02c25d1df75a', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '1cd9ec32-8b60-4637-a3cf-02c25d1df75a', 'parent_id': None, 'argsrepr': '(1,)', 'kwargsrepr': '{\'raw_tool_source\': \'\n \n \n operation_0224\n \n \n python \\\'$__tool_directory__/data_fetch.py\\\'\n --galaxy-root \\\'$GALAXY_ROOT_DIR\\\'\n --datatypes-registry \\\'$GALAXY_DATATYPES_CONF_FILE\\\'\n --request-version \\\'$request_version\\\'\n --request \\\'$request_path\\\'\n ... kwargs:{}) uvicorn.access INFO 2026-09-17 11:50:44,940 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55400 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:45,205 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55402 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 [2026-09-17 11:50:45,391: INFO/MainProcess] setup plugin alembic.autogenerate.schemas [2026-09-17 11:50:45,391: INFO/MainProcess] setup plugin alembic.autogenerate.tables [2026-09-17 11:50:45,391: INFO/MainProcess] setup plugin alembic.autogenerate.types [2026-09-17 11:50:45,391: INFO/MainProcess] setup plugin alembic.autogenerate.constraints [2026-09-17 11:50:45,391: INFO/MainProcess] setup plugin alembic.autogenerate.defaults [2026-09-17 11:50:45,391: INFO/MainProcess] setup plugin alembic.autogenerate.comments uvicorn.access INFO 2026-09-17 11:50:45,466 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55404 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 [2026-09-17 11:50:45,706: DEBUG/MainProcess] python path is: /Users/scottcain/.planemo/gx_venv_3/bin, /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/lib, /opt/homebrew/Caskroom/miniconda/base/lib/python313.zip, /opt/homebrew/Caskroom/miniconda/base/lib/python3.13, /opt/homebrew/Caskroom/miniconda/base/lib/python3.13/lib-dynload, /Users/scottcain/.planemo/gx_venv_3/lib/python3.13/site-packages [2026-09-17 11:50:45,707: DEBUG/MainProcess] Configuration directory is /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz [2026-09-17 11:50:45,707: DEBUG/MainProcess] Data directory is /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/database [2026-09-17 11:50:45,707: DEBUG/MainProcess] Managed config directory is /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz [2026-09-17 11:50:45,717: WARNING/MainProcess] Option master_api_key has been deprecated in favor of bootstrap_admin_api_key [2026-09-17 11:50:45,718: WARNING/MainProcess] Trying to resolve path for the 'email_ban_file' option but it's empty/None [2026-09-17 11:50:45,718: WARNING/MainProcess] Trying to resolve path for the 'data_manager_config_file' option but it's empty/None [2026-09-17 11:50:45,718: DEBUG/MainProcess] No extra version JSON file detected at /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/version.json [2026-09-17 11:50:45,719: INFO/MainProcess] Install database targeting Galaxy's database configuration. [2026-09-17 11:50:45,725: DEBUG/main] WeblessApplicationStack initialized uvicorn.access INFO 2026-09-17 11:50:45,728 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55424 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 [2026-09-17 11:50:45,759: DEBUG/main] Read job configuration from file: /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_conf.yml [2026-09-17 11:50:45,761: DEBUG/main] Database does not support WITH FOR UPDATE statement, cannot use DB-SKIP-LOCKED handler assignment [2026-09-17 11:50:45,761: INFO/main] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_TRANSACTION_ISOLATION', set the `assign_with` attribute on to override the default [2026-09-17 11:50:45,761: INFO/main] Job handler assignment methods set to: db-transaction-isolation [2026-09-17 11:50:45,761: DEBUG/main] default set to child with id or tag 'local' [2026-09-17 11:50:45,761: DEBUG/main] Done loading job configuration [2026-09-17 11:50:45,762: WARNING/main] URL headers configuration file not found: /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/url_headers_conf.yml. Using null configuration. [2026-09-17 11:50:45,763: INFO/main] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/celery_broker.sqlite [2026-09-17 11:50:45,977: WARNING/main] /Users/scottcain/.planemo/gx_venv_3/lib/python3.13/site-packages/fs/__init__.py:4: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. __import__("pkg_resources").declare_namespace(__name__) # type: ignore uvicorn.access INFO 2026-09-17 11:50:45,992 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55426 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:46,255 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55428 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 [2026-09-17 11:50:46,299: DEBUG/main] Loading datatypes from /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/lib/galaxy/config/sample/datatypes_conf.xml.sample [2026-09-17 11:50:46,300: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. [2026-09-17 11:50:46,300: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. [2026-09-17 11:50:46,300: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. [2026-09-17 11:50:46,300: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. [2026-09-17 11:50:46,300: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. [2026-09-17 11:50:46,300: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. [2026-09-17 11:50:46,300: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. [2026-09-17 11:50:46,300: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markdown. [2026-09-17 11:50:46,300: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension rmd. [2026-09-17 11:50:46,300: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. [2026-09-17 11:50:46,300: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. [2026-09-17 11:50:46,300: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. [2026-09-17 11:50:46,300: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension a2m. [2026-09-17 11:50:46,304: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. [2026-09-17 11:50:46,307: DEBUG/main] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. [2026-09-17 11:50:46,307: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension alto. [2026-09-17 11:50:46,307: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension page.xml. [2026-09-17 11:50:46,307: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension abbyy.xml. [2026-09-17 11:50:46,308: ERROR/main] Error importing datatype module galaxy.datatypes.html Traceback (most recent call last): File "/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/lib/galaxy/datatypes/registry.py", line 235, in load_datatypes module = __import__(datatype_module) ModuleNotFoundError: No module named 'galaxy.datatypes.html' [2026-09-17 11:50:46,311: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. [2026-09-17 11:50:46,311: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. [2026-09-17 11:50:46,311: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. [2026-09-17 11:50:46,311: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. [2026-09-17 11:50:46,311: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. [2026-09-17 11:50:46,311: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. [2026-09-17 11:50:46,311: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Taf from the datatype registry for extension taf. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. [2026-09-17 11:50:46,312: DEBUG/main] Loaded preferred visualization definition: bam -> igv [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. [2026-09-17 11:50:46,312: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. [2026-09-17 11:50:46,315: DEBUG/main] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. [2026-09-17 11:50:46,315: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. [2026-09-17 11:50:46,315: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. [2026-09-17 11:50:46,315: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. [2026-09-17 11:50:46,315: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. [2026-09-17 11:50:46,315: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension arrow. [2026-09-17 11:50:46,315: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. [2026-09-17 11:50:46,315: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. [2026-09-17 11:50:46,315: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. [2026-09-17 11:50:46,315: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. [2026-09-17 11:50:46,315: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. [2026-09-17 11:50:46,315: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. [2026-09-17 11:50:46,315: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:GeoCSV from the datatype registry for extension geocsv. [2026-09-17 11:50:46,315: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. [2026-09-17 11:50:46,315: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. [2026-09-17 11:50:46,315: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension las. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension laz. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension pnts. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:CytoscapeJson from the datatype registry for extension cytoscapejson. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension freq.json. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. [2026-09-17 11:50:46,319: DEBUG/main] Loaded preferred visualization definition: geojson -> openlayers [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:VitessceJson from the datatype registry for extension vitessce.json. [2026-09-17 11:50:46,319: DEBUG/main] Loaded preferred visualization definition: vitessce.json -> vitessce [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:AuspiceJson from the datatype registry for extension auspice.json. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:DataManagerJson from the datatype registry for extension data_manager_json. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. [2026-09-17 11:50:46,319: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension a3m. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. [2026-09-17 11:50:46,320: DEBUG/main] Loaded preferred visualization definition: h5 -> h5web [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5mu. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mzmlb. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mbi. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. [2026-09-17 11:50:46,320: DEBUG/main] Loaded preferred visualization definition: hyphy_results.json -> hyphyvision [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Hic from the datatype registry for extension hic. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension fastk_ktab. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension fastk_hist. [2026-09-17 11:50:46,320: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension fastk_prof. [2026-09-17 11:50:46,321: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension fastk_ktab_tar. [2026-09-17 11:50:46,321: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Numpy from the datatype registry for extension npy. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. [2026-09-17 11:50:46,429: DEBUG/main] Loaded preferred visualization definition: tiff -> tiffviewer [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Dicom from the datatype registry for extension dcm. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. [2026-09-17 11:50:46,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. [2026-09-17 11:50:46,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. [2026-09-17 11:50:46,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZarrZipArchive from the datatype registry for extension zarr.zip. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedOMEZarrZipArchive from the datatype registry for extension ome_zarr.zip. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SpatialData from the datatype registry for extension spatialdata.zip. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension bwa_index. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension bwa_mem2_index. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension egapx_local_cache. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension lexicmap_index. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension kmindex. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:ZarrDirectory from the datatype registry for extension zarr. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:OMEZarr from the datatype registry for extension ome_zarr. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. [2026-09-17 11:50:46,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. [2026-09-17 11:50:46,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveXz from the datatype registry for extension fast5.tar.xz. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Pod5 from the datatype registry for extension pod5. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. [2026-09-17 11:50:46,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension colab.tar. [2026-09-17 11:50:46,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. [2026-09-17 11:50:46,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. [2026-09-17 11:50:46,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. [2026-09-17 11:50:46,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. [2026-09-17 11:50:46,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. [2026-09-17 11:50:46,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. [2026-09-17 11:50:46,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. [2026-09-17 11:50:46,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. [2026-09-17 11:50:46,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. [2026-09-17 11:50:46,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. [2026-09-17 11:50:46,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. [2026-09-17 11:50:46,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension amnisflow.cif. [2026-09-17 11:50:46,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. [2026-09-17 11:50:46,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:FourDNPairs from the datatype registry for extension 4dn_pairs. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:FourDNPairsam from the datatype registry for extension 4dn_pairsam. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. [2026-09-17 11:50:46,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Tei from the datatype registry for extension tei. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension vg.loci. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension vg.dist. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension vg.snarls. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension vg.gamp. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension vg.min. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension vg.zipcodes. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension vg.gg. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gbz. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gbwt. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hal. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hal.pg. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hal.hg. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gam. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension bgzip. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension gwas_bgzip. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension gwas_tabix.gz. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. [2026-09-17 11:50:46,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension beast.trees. [2026-09-17 11:50:46,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. [2026-09-17 11:50:46,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. [2026-09-17 11:50:46,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. [2026-09-17 11:50:46,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. [2026-09-17 11:50:46,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. [2026-09-17 11:50:46,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. [2026-09-17 11:50:46,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. [2026-09-17 11:50:46,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. [2026-09-17 11:50:46,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. [2026-09-17 11:50:46,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. [2026-09-17 11:50:46,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. [2026-09-17 11:50:46,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. [2026-09-17 11:50:46,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. [2026-09-17 11:50:46,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. [2026-09-17 11:50:46,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. [2026-09-17 11:50:46,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. [2026-09-17 11:50:46,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. [2026-09-17 11:50:46,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. [2026-09-17 11:50:46,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. [2026-09-17 11:50:46,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. [2026-09-17 11:50:46,454: DEBUG/main] Loaded preferred visualization definition: ipynb -> jupyterlite [2026-09-17 11:50:46,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. [2026-09-17 11:50:46,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension tool_markdown. [2026-09-17 11:50:46,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. [2026-09-17 11:50:46,460: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. [2026-09-17 11:50:46,460: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. [2026-09-17 11:50:46,463: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. [2026-09-17 11:50:46,463: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. [2026-09-17 11:50:46,463: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. [2026-09-17 11:50:46,463: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. [2026-09-17 11:50:46,463: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Sbol from the datatype registry for extension sbol. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Docx from the datatype registry for extension docx. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Pptx from the datatype registry for extension pptx. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gaf. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. [2026-09-17 11:50:46,464: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. [2026-09-17 11:50:46,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. [2026-09-17 11:50:46,469: DEBUG/main] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. [2026-09-17 11:50:46,469: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. [2026-09-17 11:50:46,469: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. [2026-09-17 11:50:46,469: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. [2026-09-17 11:50:46,469: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. [2026-09-17 11:50:46,472: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. [2026-09-17 11:50:46,472: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. [2026-09-17 11:50:46,472: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. [2026-09-17 11:50:46,472: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. [2026-09-17 11:50:46,472: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. [2026-09-17 11:50:46,473: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. [2026-09-17 11:50:46,473: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. [2026-09-17 11:50:46,473: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. [2026-09-17 11:50:46,473: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. [2026-09-17 11:50:46,473: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. [2026-09-17 11:50:46,477: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. [2026-09-17 11:50:46,477: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. [2026-09-17 11:50:46,477: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. [2026-09-17 11:50:46,477: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. [2026-09-17 11:50:46,477: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. [2026-09-17 11:50:46,477: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. [2026-09-17 11:50:46,477: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. [2026-09-17 11:50:46,477: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. [2026-09-17 11:50:46,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. [2026-09-17 11:50:46,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. [2026-09-17 11:50:46,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. [2026-09-17 11:50:46,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. [2026-09-17 11:50:46,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. [2026-09-17 11:50:46,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. [2026-09-17 11:50:46,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. [2026-09-17 11:50:46,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. [2026-09-17 11:50:46,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. [2026-09-17 11:50:46,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. [2026-09-17 11:50:46,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. [2026-09-17 11:50:46,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. [2026-09-17 11:50:46,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. [2026-09-17 11:50:46,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. [2026-09-17 11:50:46,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. [2026-09-17 11:50:46,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. [2026-09-17 11:50:46,487: DEBUG/main] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. [2026-09-17 11:50:46,487: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. [2026-09-17 11:50:46,487: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rrd. [2026-09-17 11:50:46,487: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Prm from the datatype registry for extension prm. [2026-09-17 11:50:46,487: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. [2026-09-17 11:50:46,487: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. [2026-09-17 11:50:46,487: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. [2026-09-17 11:50:46,487: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. [2026-09-17 11:50:46,487: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. [2026-09-17 11:50:46,487: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. [2026-09-17 11:50:46,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. [2026-09-17 11:50:46,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. [2026-09-17 11:50:46,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. [2026-09-17 11:50:46,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. [2026-09-17 11:50:46,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. [2026-09-17 11:50:46,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtpAscii from the datatype registry for extension vtpascii. [2026-09-17 11:50:46,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtpBinary from the datatype registry for extension vtpbinary. [2026-09-17 11:50:46,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. [2026-09-17 11:50:46,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. [2026-09-17 11:50:46,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. [2026-09-17 11:50:46,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SourmashSignature from the datatype registry for extension sourmash.sig. [2026-09-17 11:50:46,490: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. [2026-09-17 11:50:46,493: DEBUG/main] Loaded preferred visualization definition: sdf -> molstar [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. [2026-09-17 11:50:46,493: DEBUG/main] Loaded preferred visualization definition: mol -> molstar [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. [2026-09-17 11:50:46,493: DEBUG/main] Loaded preferred visualization definition: mol2 -> molstar [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. [2026-09-17 11:50:46,493: DEBUG/main] Loaded preferred visualization definition: cml -> molstar [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. [2026-09-17 11:50:46,493: DEBUG/main] Loaded preferred visualization definition: pdb -> molstar [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:Magres from the datatype registry for extension magres. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. [2026-09-17 11:50:46,493: DEBUG/main] Loaded preferred visualization definition: gro -> molstar [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. [2026-09-17 11:50:46,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. [2026-09-17 11:50:46,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. [2026-09-17 11:50:46,498: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. [2026-09-17 11:50:46,498: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. [2026-09-17 11:50:46,498: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. [2026-09-17 11:50:46,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. [2026-09-17 11:50:46,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. [2026-09-17 11:50:46,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. [2026-09-17 11:50:46,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. [2026-09-17 11:50:46,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. [2026-09-17 11:50:46,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. [2026-09-17 11:50:46,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. [2026-09-17 11:50:46,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. [2026-09-17 11:50:46,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. [2026-09-17 11:50:46,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. [2026-09-17 11:50:46,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. [2026-09-17 11:50:46,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. [2026-09-17 11:50:46,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. [2026-09-17 11:50:46,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. [2026-09-17 11:50:46,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. [2026-09-17 11:50:46,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. [2026-09-17 11:50:46,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. [2026-09-17 11:50:46,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. [2026-09-17 11:50:46,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. [2026-09-17 11:50:46,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. [2026-09-17 11:50:46,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. [2026-09-17 11:50:46,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. [2026-09-17 11:50:46,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. [2026-09-17 11:50:46,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. [2026-09-17 11:50:46,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. [2026-09-17 11:50:46,508: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. [2026-09-17 11:50:46,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. [2026-09-17 11:50:46,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. [2026-09-17 11:50:46,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. [2026-09-17 11:50:46,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. [2026-09-17 11:50:46,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. [2026-09-17 11:50:46,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. [2026-09-17 11:50:46,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. [2026-09-17 11:50:46,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. [2026-09-17 11:50:46,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. [2026-09-17 11:50:46,512: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. [2026-09-17 11:50:46,513: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. [2026-09-17 11:50:46,513: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Ogg from the datatype registry for extension ogg. [2026-09-17 11:50:46,513: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Wma from the datatype registry for extension wma. [2026-09-17 11:50:46,513: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. [2026-09-17 11:50:46,513: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. [2026-09-17 11:50:46,513: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:M4a from the datatype registry for extension m4a. [2026-09-17 11:50:46,513: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. [2026-09-17 11:50:46,513: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Flac from the datatype registry for extension flac. [2026-09-17 11:50:46,513: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Webm from the datatype registry for extension webm. [2026-09-17 11:50:46,513: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. [2026-09-17 11:50:46,513: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mov from the datatype registry for extension mov. [2026-09-17 11:50:46,513: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Avi from the datatype registry for extension avi. [2026-09-17 11:50:46,513: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Wmv from the datatype registry for extension wmv. [2026-09-17 11:50:46,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. [2026-09-17 11:50:46,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. [2026-09-17 11:50:46,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. [2026-09-17 11:50:46,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. [2026-09-17 11:50:46,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. [2026-09-17 11:50:46,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. [2026-09-17 11:50:46,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. [2026-09-17 11:50:46,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. [2026-09-17 11:50:46,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. [2026-09-17 11:50:46,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. [2026-09-17 11:50:46,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. [2026-09-17 11:50:46,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkXml from the datatype registry for extension vtkxml. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GocadSGrid from the datatype registry for extension gocad.sg. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:FeflowFem from the datatype registry for extension feflow.fem. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:AsciiRaster from the datatype registry for extension raster.asc. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. [2026-09-17 11:50:46,517: DEBUG/main] Overriding conflicting datatype with extension 'stl', using datatype from /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/lib/galaxy/config/sample/datatypes_conf.xml.sample. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. [2026-09-17 11:50:46,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. uvicorn.access INFO 2026-09-17 11:50:46,519 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55430 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 [2026-09-17 11:50:46,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. [2026-09-17 11:50:46,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. [2026-09-17 11:50:46,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. [2026-09-17 11:50:46,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. [2026-09-17 11:50:46,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. [2026-09-17 11:50:46,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. [2026-09-17 11:50:46,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. [2026-09-17 11:50:46,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. [2026-09-17 11:50:46,525: DEBUG/main] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. [2026-09-17 11:50:46,525: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. [2026-09-17 11:50:46,525: DEBUG/main] Loaded preferred visualization definition: fits -> aladin [2026-09-17 11:50:46,528: DEBUG/main] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. [2026-09-17 11:50:46,528: DEBUG/main] Retrieved datatype module galaxy.datatypes.chain:Net from the datatype registry for extension ucsc.net. [2026-09-17 11:50:46,528: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bcsp. [2026-09-17 11:50:46,528: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rd. [2026-09-17 11:50:46,528: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Safetensors from the datatype registry for extension safetensors. [2026-09-17 11:50:46,528: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension mlmodel. [2026-09-17 11:50:46,528: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension deacon.idx. [2026-09-17 11:50:46,528: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension rmsx.json. [2026-09-17 11:50:46,528: DEBUG/main] Loaded preferred visualization definition: rmsx.json -> rmsxflipbook [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtpAscii' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtpBinary' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkXml' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GocadSGrid' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:FeflowFem' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:AsciiRaster' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' [2026-09-17 11:50:46,528: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Hic' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveXz' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pod5' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Docx' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pptx' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Numpy' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SpatialData' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedOMEZarrZipArchive' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZarrZipArchive' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.chain:Net' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' [2026-09-17 11:50:46,529: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Sbol' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Magres' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' [2026-09-17 11:50:46,530: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Taf' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:FourDNPairs' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:FourDNPairsam' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:CytoscapeJson' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:VitessceJson' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:GeoCSV' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' [2026-09-17 11:50:46,531: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Dicom' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:M4a' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Ogg' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mov' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Avi' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Wmv' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Wma' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Webm' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' [2026-09-17 11:50:46,532: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' [2026-09-17 11:50:46,533: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' [2026-09-17 11:50:46,533: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' [2026-09-17 11:50:46,533: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' [2026-09-17 11:50:46,533: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' [2026-09-17 11:50:46,533: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' [2026-09-17 11:50:46,533: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' [2026-09-17 11:50:46,533: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' [2026-09-17 11:50:46,533: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:SourmashSignature' [2026-09-17 11:50:46,534: DEBUG/main] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. [2026-09-17 11:50:46,534: DEBUG/main] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] [2026-09-17 11:50:46,534: DEBUG/main] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] [2026-09-17 11:50:46,534: DEBUG/main] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt [2026-09-17 11:50:46,534: DEBUG/main] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt [2026-09-17 11:50:46,534: DEBUG/main] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. [2026-09-17 11:50:46,534: DEBUG/main] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample [2026-09-17 11:50:46,534: DEBUG/main] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. [2026-09-17 11:50:46,534: DEBUG/main] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample [2026-09-17 11:50:46,544: DEBUG/main] Loaded 0 lines from '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/tool-data/shed/kmindex.loc' for 'kmindex' [2026-09-17 11:50:46,544: DEBUG/main] Loaded tool data table 'kmindex' from file '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tool_data_table_conf.xml' [2026-09-17 11:50:46,545: DEBUG/main] Loaded 0 lines from '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/galaxy-dev/tool-data/shed/lexicmap_index.loc' for 'lexicmap_index' [2026-09-17 11:50:46,545: DEBUG/main] Loaded tool data table 'lexicmap_index' from file '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/shed_tool_data_table_conf.xml' [2026-09-17 11:50:46,545: DEBUG/main] Loading references to tool sheds from /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/tool_sheds_conf.xml [2026-09-17 11:50:46,545: DEBUG/main] Loaded reference to tool shed: toolshed.g2.bx.psu.edu [2026-09-17 11:50:46,658: DEBUG/main] No parameter model for tool '__DATA_FETCH__': Cannot generate a tool parameter model for upload_dataset inputs [2026-09-17 11:50:46,683: DEBUG/main] (1) Working directory for job is: /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/1 [2026-09-17 11:50:46,730: DEBUG/main] Job wrapper for Job [1] prepared (16.112 ms) [2026-09-17 11:50:46,731: INFO/main] Successfully executed Celery task setup_fetch_data setup_fetch_data (72.627 ms) [2026-09-17 11:50:46,756: INFO/main] Task galaxy.setup_fetch_data[1cd9ec32-8b60-4637-a3cf-02c25d1df75a] succeeded in 1.8608745420351624s: ('/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/1', '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/1/request.json', {'file_sources': [{...}, {...}, {...}, {...}, {...}, {...}], 'config': {'symlink_allowlist': [...], 'fetch_url_allowlist': [...], 'library_import_dir': None, 'user_library_import_dir': None, 'ftp_upload_dir': '/Users/scottcain/git/dms/draft-manuscript-galaxy/test-data', 'ftp_upload_purge': False, 'tmp_dir': None, 'listings_expiry_time': 60}}) uvicorn.access INFO 2026-09-17 11:50:46,782 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55432 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 [2026-09-17 11:50:46,939: INFO/main] Task galaxy.fetch_data[515e4a5e-4fba-4fa8-89e7-1ddddb83548e] received [2026-09-17 11:50:46,940: DEBUG/main] TaskPool: Apply (args:('galaxy.fetch_data', '515e4a5e-4fba-4fa8-89e7-1ddddb83548e', {'lang': 'py', 'task': 'galaxy.fetch_data', 'id': '515e4a5e-4fba-4fa8-89e7-1ddddb83548e', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '1cd9ec32-8b60-4637-a3cf-02c25d1df75a', 'parent_id': '1cd9ec32-8b60-4637-a3cf-02c25d1df75a', 'argsrepr': "(('/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/1', '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/1/request.json', {'file_sources': [...], 'config': {...}}),)", 'kwargsrepr': "{'job_id': 1}", 'origin': 'gen87528@e1-055847.science.psu.edu', 'ignore_result': False, 'replaced_task_nesting': 0, 'stamped_headers': None, 'stamps': {}, 'properties': {'correlation_id': '515e4a5e-4fba-4fa8-89e7-1ddddb83548e', 'reply_to': '8443ea6b-afda-3ad3-a4f1-1acaa9b0036d', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key':... kwargs:{}) uvicorn.access INFO 2026-09-17 11:50:47,042 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55434 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:47,306 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55436 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:47,568 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55440 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:47,833 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55442 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:48,097 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55444 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:48,361 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55446 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:48,625 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55448 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:48,889 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55451 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 Option master_api_key has been deprecated in favor of bootstrap_admin_api_key Option master_api_key has been deprecated in favor of bootstrap_admin_api_key Trying to resolve path for the 'email_ban_file' option but it's empty/None Trying to resolve path for the 'email_ban_file' option but it's empty/None Trying to resolve path for the 'data_manager_config_file' option but it's empty/None Trying to resolve path for the 'data_manager_config_file' option but it's empty/None uvicorn.access INFO 2026-09-17 11:50:49,150 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55453 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:49,413 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55455 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:49,676 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55457 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:49,940 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55459 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:50,200 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55461 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:50,458 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55463 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:50,718 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55466 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:50,982 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55468 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:51,242 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55470 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:51,501 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55473 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 [2026-09-17 11:50:51,744: INFO/main] Successfully executed Celery task fetch_data to Run fetch_data fetch_data to Run fetch_data (4803.955 ms) [2026-09-17 11:50:51,749: INFO/main] Task galaxy.fetch_data[515e4a5e-4fba-4fa8-89e7-1ddddb83548e] succeeded in 4.8091336250072345s: '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/1' uvicorn.access INFO 2026-09-17 11:50:51,762 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55475 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 [2026-09-17 11:50:51,978: INFO/main] Task galaxy.set_job_metadata[aee9a99f-9545-44e5-b795-300cf37b0c00] received [2026-09-17 11:50:51,979: DEBUG/main] TaskPool: Apply (args:('galaxy.set_job_metadata', 'aee9a99f-9545-44e5-b795-300cf37b0c00', {'lang': 'py', 'task': 'galaxy.set_job_metadata', 'id': 'aee9a99f-9545-44e5-b795-300cf37b0c00', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '1cd9ec32-8b60-4637-a3cf-02c25d1df75a', 'parent_id': '515e4a5e-4fba-4fa8-89e7-1ddddb83548e', 'argsrepr': "('/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/1',)", 'kwargsrepr': "{'extended_metadata_collection': False, 'job_id': 1}", 'origin': 'gen87528@e1-055847.science.psu.edu', 'ignore_result': False, 'replaced_task_nesting': 0, 'stamped_headers': None, 'stamps': {}, 'properties': {'correlation_id': 'aee9a99f-9545-44e5-b795-300cf37b0c00', 'reply_to': '8443ea6b-afda-3ad3-a4f1-1acaa9b0036d', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.external'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag':... kwargs:{}) uvicorn.access INFO 2026-09-17 11:50:52,032 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55477 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 [2026-09-17 11:50:52,183: INFO/main] Successfully executed Celery task set_job_metadata to set metadata for job set_job_metadata to set metadata for job (203.414 ms) [2026-09-17 11:50:52,189: INFO/main] Task galaxy.set_job_metadata[aee9a99f-9545-44e5-b795-300cf37b0c00] succeeded in 0.20986162504414096s: None uvicorn.access INFO 2026-09-17 11:50:52,295 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55479 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:52,580 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55481 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:52,857 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55483 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 [2026-09-17 11:50:53,000: INFO/main] Task galaxy.finish_job[c83ded35-5c20-46b5-8f8a-76b6951e82ca] received [2026-09-17 11:50:53,000: DEBUG/main] TaskPool: Apply (args:('galaxy.finish_job', 'c83ded35-5c20-46b5-8f8a-76b6951e82ca', {'lang': 'py', 'task': 'galaxy.finish_job', 'id': 'c83ded35-5c20-46b5-8f8a-76b6951e82ca', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '1cd9ec32-8b60-4637-a3cf-02c25d1df75a', 'parent_id': 'aee9a99f-9545-44e5-b795-300cf37b0c00', 'argsrepr': '()', 'kwargsrepr': '{\'job_id\': 1, \'raw_tool_source\': \'\n \n \n operation_0224\n \n \n python \\\'$__tool_directory__/data_fetch.py\\\'\n --galaxy-root \\\'$GALAXY_ROOT_DIR\\\'\n --datatypes-registry \\\'$GALAXY_DATATYPES_CONF_FILE\\\'\n --request-version \\\'$request_version\\\'\n --request... kwargs:{}) [2026-09-17 11:50:53,022: DEBUG/main] finish(): Moved /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/1/outputs/dataset_db8244c7-e7c8-4515-be40-e9e58b3306e4.dat to /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/files/d/b/8/dataset_db8244c7-e7c8-4515-be40-e9e58b3306e4.dat [2026-09-17 11:50:53,027: DEBUG/main] unnamed outputs [{'__unnamed_outputs': [{'destination': {'type': 'hdas'}, 'elements': [{'name': 'E.fasta', 'dbkey': '?', 'ext': 'fasta', 'link_data_only': False, 'sources': [], 'hashes': [], 'info': 'uploaded fasta file', 'state': 'ok', 'filename': '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/1/working/data_fetch_upload_lbkraklg', 'object_id': 1}]}]}] [2026-09-17 11:50:53,063: INFO/main] Collecting metrics for Job 1 in /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/1 [2026-09-17 11:50:53,069: DEBUG/main] job_wrapper.finish for job 1 executed (57.288 ms) [2026-09-17 11:50:53,069: INFO/main] Successfully executed Celery task finish_job finish_job (66.278 ms) [2026-09-17 11:50:53,073: INFO/main] Task galaxy.finish_job[c83ded35-5c20-46b5-8f8a-76b6951e82ca] succeeded in 0.07184254203457385s: None uvicorn.access INFO 2026-09-17 11:50:53,120 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55485 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 galaxy.tools INFO 2026-09-17 11:50:53,129 [pN:main.1,p:87561,tN:AnyIO worker thread] Validated and populated state for tool request (0.053 ms) uvicorn.access INFO 2026-09-17 11:50:53,167 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55487 - "POST /api/tools/fetch HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:53,176 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55489 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:53,456 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55491 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:53,737 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55493 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 [2026-09-17 11:50:54,020: INFO/main] Task galaxy.compute_dataset_hash[6024803d-b932-4bc1-9161-cd44af2c686b] received [2026-09-17 11:50:54,020: DEBUG/main] TaskPool: Apply (args:('galaxy.compute_dataset_hash', '6024803d-b932-4bc1-9161-cd44af2c686b', {'lang': 'py', 'task': 'galaxy.compute_dataset_hash', 'id': '6024803d-b932-4bc1-9161-cd44af2c686b', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '1cd9ec32-8b60-4637-a3cf-02c25d1df75a', 'parent_id': 'c83ded35-5c20-46b5-8f8a-76b6951e82ca', 'argsrepr': '()', 'kwargsrepr': "{'request': ComputeDatasetHashTaskRequest(dataset_id=1, extra_files_path=None, hash_function='SHA-256', user=None)}", 'origin': 'gen87528@e1-055847.science.psu.edu', 'ignore_result': False, 'replaced_task_nesting': 0, 'stamped_headers': None, 'stamps': {}, 'properties': {'correlation_id': '6024803d-b932-4bc1-9161-cd44af2c686b', 'reply_to': '91526c99-e70c-3907-bd93-4efbf4c9d4e1', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'bd1c2edc-4f9f-482a-989b-e39c90ed49be'}, 'reply_to':... kwargs:{}) uvicorn.access INFO 2026-09-17 11:50:54,026 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55495 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 [2026-09-17 11:50:54,030: INFO/main] Task galaxy.setup_fetch_data[75ac936e-5937-43c2-822c-25b4de230305] received [2026-09-17 11:50:54,030: DEBUG/main] TaskPool: Apply (args:('galaxy.setup_fetch_data', '75ac936e-5937-43c2-822c-25b4de230305', {'lang': 'py', 'task': 'galaxy.setup_fetch_data', 'id': '75ac936e-5937-43c2-822c-25b4de230305', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '75ac936e-5937-43c2-822c-25b4de230305', 'parent_id': None, 'argsrepr': '(2,)', 'kwargsrepr': '{\'raw_tool_source\': \'\n \n \n operation_0224\n \n \n python \\\'$__tool_directory__/data_fetch.py\\\'\n --galaxy-root \\\'$GALAXY_ROOT_DIR\\\'\n --datatypes-registry \\\'$GALAXY_DATATYPES_CONF_FILE\\\'\n --request-version \\\'$request_version\\\'\n --request \\\'$request_path\\\'\n ... kwargs:{}) [2026-09-17 11:50:54,039: INFO/main] Successfully executed Celery task compute_dataset_hash to compute dataset hash and store in database compute_dataset_hash to compute dataset hash and store in database (17.013 ms) [2026-09-17 11:50:54,045: INFO/main] Task galaxy.compute_dataset_hash[6024803d-b932-4bc1-9161-cd44af2c686b] succeeded in 0.023929792048875242s: None [2026-09-17 11:50:54,054: DEBUG/main] (2) Working directory for job is: /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/2 [2026-09-17 11:50:54,100: DEBUG/main] Job wrapper for Job [2] prepared (19.955 ms) [2026-09-17 11:50:54,100: INFO/main] Successfully executed Celery task setup_fetch_data setup_fetch_data (67.820 ms) [2026-09-17 11:50:54,137: INFO/main] Task galaxy.setup_fetch_data[75ac936e-5937-43c2-822c-25b4de230305] succeeded in 0.10522062500240281s: ('/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/2', '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/2/request.json', {'file_sources': [{...}, {...}, {...}, {...}, {...}, {...}], 'config': {'symlink_allowlist': [...], 'fetch_url_allowlist': [...], 'library_import_dir': None, 'user_library_import_dir': None, 'ftp_upload_dir': '/Users/scottcain/git/dms/draft-manuscript-galaxy/test-data', 'ftp_upload_purge': False, 'tmp_dir': None, 'listings_expiry_time': 60}}) uvicorn.access INFO 2026-09-17 11:50:54,297 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55497 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:54,583 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55499 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:54,852 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55502 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 [2026-09-17 11:50:55,048: INFO/main] Task galaxy.fetch_data[1035847e-8495-4bd5-8d65-1125fd875dce] received [2026-09-17 11:50:55,055: DEBUG/main] TaskPool: Apply (args:('galaxy.fetch_data', '1035847e-8495-4bd5-8d65-1125fd875dce', {'lang': 'py', 'task': 'galaxy.fetch_data', 'id': '1035847e-8495-4bd5-8d65-1125fd875dce', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '75ac936e-5937-43c2-822c-25b4de230305', 'parent_id': '75ac936e-5937-43c2-822c-25b4de230305', 'argsrepr': "(('/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/2', '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/2/request.json', {'file_sources': [...], 'config': {...}}),)", 'kwargsrepr': "{'job_id': 2}", 'origin': 'gen87528@e1-055847.science.psu.edu', 'ignore_result': False, 'replaced_task_nesting': 0, 'stamped_headers': None, 'stamps': {}, 'properties': {'correlation_id': '1035847e-8495-4bd5-8d65-1125fd875dce', 'reply_to': '8443ea6b-afda-3ad3-a4f1-1acaa9b0036d', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key':... kwargs:{}) uvicorn.access INFO 2026-09-17 11:50:55,134 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55504 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:55,399 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55506 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:55,658 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55510 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:55,917 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55528 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:56,180 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55530 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:56,443 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55533 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:56,706 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55535 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 [2026-09-17 11:50:56,843: INFO/main] Successfully executed Celery task fetch_data to Run fetch_data fetch_data to Run fetch_data (1781.497 ms) [2026-09-17 11:50:56,856: INFO/main] Task galaxy.fetch_data[1035847e-8495-4bd5-8d65-1125fd875dce] succeeded in 1.7951886669616215s: '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/2' uvicorn.access INFO 2026-09-17 11:50:56,974 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55537 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 [2026-09-17 11:50:57,093: INFO/main] Task galaxy.set_job_metadata[48122502-d055-4e4e-8073-c7711d4ac374] received [2026-09-17 11:50:57,094: DEBUG/main] TaskPool: Apply (args:('galaxy.set_job_metadata', '48122502-d055-4e4e-8073-c7711d4ac374', {'lang': 'py', 'task': 'galaxy.set_job_metadata', 'id': '48122502-d055-4e4e-8073-c7711d4ac374', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '75ac936e-5937-43c2-822c-25b4de230305', 'parent_id': '1035847e-8495-4bd5-8d65-1125fd875dce', 'argsrepr': "('/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/2',)", 'kwargsrepr': "{'extended_metadata_collection': False, 'job_id': 2}", 'origin': 'gen87528@e1-055847.science.psu.edu', 'ignore_result': False, 'replaced_task_nesting': 0, 'stamped_headers': None, 'stamps': {}, 'properties': {'correlation_id': '48122502-d055-4e4e-8073-c7711d4ac374', 'reply_to': '8443ea6b-afda-3ad3-a4f1-1acaa9b0036d', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.external'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag':... kwargs:{}) [2026-09-17 11:50:57,156: INFO/main] Successfully executed Celery task set_job_metadata to set metadata for job set_job_metadata to set metadata for job (61.109 ms) [2026-09-17 11:50:57,167: INFO/main] Task galaxy.set_job_metadata[48122502-d055-4e4e-8073-c7711d4ac374] succeeded in 0.07277575001353398s: None uvicorn.access INFO 2026-09-17 11:50:57,239 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55539 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:57,524 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55541 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:57,809 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55543 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:58,094 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55545 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 [2026-09-17 11:50:58,106: INFO/main] Task galaxy.finish_job[0518d2dd-b0f4-4e17-a38e-8dcd855ae961] received [2026-09-17 11:50:58,106: DEBUG/main] TaskPool: Apply (args:('galaxy.finish_job', '0518d2dd-b0f4-4e17-a38e-8dcd855ae961', {'lang': 'py', 'task': 'galaxy.finish_job', 'id': '0518d2dd-b0f4-4e17-a38e-8dcd855ae961', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '75ac936e-5937-43c2-822c-25b4de230305', 'parent_id': '48122502-d055-4e4e-8073-c7711d4ac374', 'argsrepr': '()', 'kwargsrepr': '{\'job_id\': 2, \'raw_tool_source\': \'\n \n \n operation_0224\n \n \n python \\\'$__tool_directory__/data_fetch.py\\\'\n --galaxy-root \\\'$GALAXY_ROOT_DIR\\\'\n --datatypes-registry \\\'$GALAXY_DATATYPES_CONF_FILE\\\'\n --request-version \\\'$request_version\\\'\n --request... kwargs:{}) [2026-09-17 11:50:58,117: DEBUG/main] finish(): Moved /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/2/outputs/dataset_2eb3004e-a9f1-4015-a8a8-eb01da3dc0ee.dat to /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/files/2/e/b/dataset_2eb3004e-a9f1-4015-a8a8-eb01da3dc0ee.dat [2026-09-17 11:50:58,119: DEBUG/main] unnamed outputs [{'__unnamed_outputs': [{'destination': {'type': 'hdas'}, 'elements': [{'name': 'J.fasta', 'dbkey': '?', 'ext': 'fasta', 'link_data_only': False, 'sources': [], 'hashes': [], 'info': 'uploaded fasta file', 'state': 'ok', 'filename': '/private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/2/working/data_fetch_upload__6iu5az2', 'object_id': 2}]}]}] [2026-09-17 11:50:58,146: INFO/main] Collecting metrics for Job 2 in /private/var/folders/x8/_0hyg7fn13gb3b7qprwgq93m0000gp/T/tmp00gt70hz/job_working_directory/000/2 [2026-09-17 11:50:58,154: DEBUG/main] job_wrapper.finish for job 2 executed (42.425 ms) [2026-09-17 11:50:58,154: INFO/main] Successfully executed Celery task finish_job finish_job (47.434 ms) [2026-09-17 11:50:58,159: INFO/main] Task galaxy.finish_job[0518d2dd-b0f4-4e17-a38e-8dcd855ae961] succeeded in 0.052269708015955985s: None uvicorn.access INFO 2026-09-17 11:50:58,379 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55547 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:58,432 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55549 - "POST /api/dataset_collections HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:58,448 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55551 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:58,459 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55553 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 Failed to execute Galaxy activity, throwing ErrorRunResponse uvicorn.access INFO 2026-09-17 11:50:58,468 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55556 - "GET /api/jobs/961e7c4742a92de4?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:58,484 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55558 - "GET /api/datasets/961e7c4742a92de4?hda_ldda=hda HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:58,490 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55560 - "GET /api/jobs/d370f8a5a064706d?full=True HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:58,498 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55562 - "GET /api/datasets/d370f8a5a064706d?hda_ldda=hda HTTP/1.1" 200 uvicorn.access INFO 2026-09-17 11:50:58,531 [pN:main.1,p:87561,tN:MainThread] 127.0.0.1:55564 - "POST /api/workflows/961e7c4742a92de4/invocations HTTP/1.1" 400 There were problems with 1 test(s) - out of 1 test(s) executed. See /Users/scottcain/git/dms/draft-manuscript-galaxy/planemo-test2-output.html for detailed breakdown. Traceback (most recent call last): File "/Users/scottcain/.local/share/uv/tools/planemo/lib/python3.13/site-packages/planemo/galaxy/activity.py", line 89, in execute return _execute(ctx, config, runnable, job_path, fail_fast=fail_fast, **kwds) File "/Users/scottcain/.local/share/uv/tools/planemo/lib/python3.13/site-packages/planemo/galaxy/activity.py", line 315, in _execute invocation = user_gi.workflows.invoke_workflow( workflow_id, ...<4 lines>... use_cached_job=kwds.get("use_cache", False), ) File "/Users/scottcain/.local/share/uv/tools/planemo/lib/python3.13/site-packages/bioblend/galaxy/workflows/__init__.py", line 593, in invoke_workflow return self._post(payload, url=url) ~~~~~~~~~~^^^^^^^^^^^^^^^^^^ File "/Users/scottcain/.local/share/uv/tools/planemo/lib/python3.13/site-packages/bioblend/galaxy/client.py", line 196, in _post return self.gi.make_post_request(url, payload=payload, files_attached=files_attached) ~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/scottcain/.local/share/uv/tools/planemo/lib/python3.13/site-packages/bioblend/galaxyclient.py", line 206, in make_post_request raise ConnectionError( ...<3 lines>... ) bioblend.ConnectionError: Unexpected HTTP status code: 400: {"err_msg":"Workflow was not invoked; the following required tools are not installed: toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset (version 5.1.0), toolshed.g2.bx.psu.edu/repos/iuc/lexicmap/lexicmap_search (version 0.9.0+galaxy1), toolshed.g2.bx.psu.edu/repos/iuc/kmindex/kmindex_query (version 0.6.1+galaxy4), lexicmap_streamer (version 1.0.0), flatten_gene_summary_json_to_row (version 1.0.0), kmindex_hit_dedup_max_score (version 1.0.0), toolshed.g2.bx.psu.edu/repos/iuc/collection_column_join/collection_column_join (version 0.0.3)","err_code":0} galaxy-workflow.gxwf.yml_1: failed