=== START 2026-09-16T22:05:16Z === git clone --mirror https://github.com/galaxyproject/galaxy /Users/mvandenb/src/worktrees/.planemo-home/.planemo/gx_repo Cloning into bare repository '/Users/mvandenb/src/worktrees/.planemo-home/.planemo/gx_repo'... git clone --branch release_26.1 --depth 1 file:///Users/mvandenb/src/worktrees/.planemo-home/.planemo/gx_repo /private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev Cloning into '/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev'... if [ -d .venv ]; then GALAXY_VIRTUAL_ENV=.venv; else GALAXY_VIRTUAL_ENV=/Users/mvandenb/src/worktrees/.planemo-home/.planemo/gx_venv_3.12_release_26.1; fi && export GALAXY_VIRTUAL_ENV && if [ ! -e "$GALAXY_VIRTUAL_ENV" ]; then /Users/mvandenb/.local/bin/virtualenv $GALAXY_VIRTUAL_ENV -p /opt/homebrew/bin/python3.12; echo "Created virtualenv"; fi && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then . "$GALAXY_VIRTUAL_ENV"/bin/activate; echo "Activated a virtualenv for Galaxy"; echo "$VIRTUAL_ENV"; else echo "Failed to activate virtualenv."; fi && ./scripts/common_startup.sh ${COMMON_STARTUP_ARGS} galaxy.util.commands WARNING: Passing program arguments as a string may be a security hazard if combined with untrusted input created virtual environment CPython3.12.13.final.0-64 in 346ms creator CPython3macOsBrew(dest=/Users/mvandenb/src/worktrees/.planemo-home/.planemo/gx_venv_3.12_release_26.1, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, via=copy, app_data_dir=/Users/mvandenb/src/worktrees/.planemo-home/Library/Application Support/virtualenv) added seed packages: pip==25.2 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator Created virtualenv Activated a virtualenv for Galaxy /Users/mvandenb/src/worktrees/.planemo-home/.planemo/gx_venv_3.12_release_26.1 Initializing tool-data/shared/ucsc/builds.txt from builds.txt.sample Initializing tool-data/shared/ucsc/manual_builds.txt from manual_builds.txt.sample Activating virtualenv at /Users/mvandenb/src/worktrees/.planemo-home/.planemo/gx_venv_3.12_release_26.1 Using Python 3.12.13 environment at: /Users/mvandenb/src/worktrees/.planemo-home/.planemo/gx_venv_3.12_release_26.1 Resolved 293 packages in 3.40s Downloading openai (1.2MiB) Downloading nodejs-wheel-binaries (50.8MiB) Downloading uvloop (1.3MiB) Downloading beartype (1.3MiB) Downloading pygments (1.2MiB) Downloading babel (9.7MiB) Downloading networkx (2.0MiB) Downloading h5py (2.9MiB) Downloading botocore (14.3MiB) Downloading hf-xet (3.6MiB) Downloading pydantic-core (1.9MiB) Downloading sqlalchemy (2.1MiB) Downloading boto (1.3MiB) Downloading pydicom (2.3MiB) Downloading tokenizers (2.9MiB) Downloading lxml (8.2MiB) Downloading pycryptodome (2.4MiB) Downloading temporalio (13.3MiB) Downloading cryptography (7.6MiB) Downloading grpcio (11.5MiB) Downloading setuptools (1.0MiB) Downloading pillow (4.5MiB) Downloading cwltool (1.6MiB) Downloading pyzmq (1.2MiB) Downloading pysam (5.7MiB) Downloading numpy (5.0MiB) Downloading bx-python (1.0MiB) Downloading mercurial (5.2MiB) Downloaded pygments Downloaded uvloop Downloaded pyzmq Downloaded beartype Downloaded setuptools Downloaded boto Downloaded pydantic-core Downloaded sqlalchemy Downloaded pydicom Downloaded networkx Downloaded tokenizers Downloaded h5py Downloaded bx-python Downloaded hf-xet Downloaded pycryptodome Building bagit==1.9.0 Building beaker==1.13.0 Building dictobj==0.4 Downloaded pillow Built dictobj==0.4 Built beaker==1.13.0 Downloaded openai Downloaded cwltool Downloaded pysam Downloaded numpy Downloaded cryptography Downloaded lxml Downloaded babel Downloaded mercurial Downloaded grpcio Building parsley==1.3 Downloaded botocore Downloaded temporalio Built parsley==1.3 Built bagit==1.9.0 Downloaded nodejs-wheel-binaries Prepared 293 packages in 3.89s Installed 293 packages in 1.02s + a2wsgi==1.10.10 + adal==1.2.7 + ag-ui-protocol==0.1.18 + aiobotocore==3.7.0 + aiofile==3.10.0 + aiofiles==25.1.0 + aiohappyeyeballs==2.6.1 + aiohttp==3.13.5 + aioitertools==0.13.0 + aiosignal==1.4.0 + alembic==1.18.4 + amqp==5.3.1 + annotated-doc==0.0.4 + annotated-types==0.7.0 + anthropic==0.102.0 + anyio==4.13.0 + apispec==6.10.0 + appdirs==1.4.4 + arcp==0.2.1 + argcomplete==3.6.3 + attrs==26.1.0 + authlib==1.7.2 + babel==2.18.0 + bagit==1.9.0 + bagit-profile==1.3.1 + bcrypt==5.0.0 + bdbag==1.8.0 + beaker==1.13.0 + beartype==0.22.9 + billiard==4.2.4 + bioblend==1.9.0 + bleach==6.3.0 + boltons==25.0.0 + boto==2.49.0 + boto3==1.43.0 + botocore==1.43.0 + bx-python==0.14.0 + cachecontrol==0.14.4 + cachetools==7.1.1 + caio==0.9.25 + celery==5.6.3 + certifi==2026.4.22 + cffi==2.0.0 + charset-normalizer==3.4.7 + circus==0.19.0 + click==8.3.3 + click-didyoumean==0.3.1 + click-plugins==1.1.1.2 + click-repl==0.3.0 + cloudauthz==0.6.0 + cloudbridge==3.2.0 + cohere==5.21.1 + coloredlogs==15.0.1 + conda-package-streaming==0.12.0 + cryptography==48.0.0 + ct3==3.4.0.post5 + cwl-upgrader==1.2.15 + cwl-utils==0.41 + cwltool==3.2.20260413085819 + cyclopts==4.12.0 + defusedxml==0.7.1 + deprecated==1.3.1 + deprecation==2.1.0 + dictobj==0.4 + distro==1.9.0 + dnspython==2.8.0 + docopt==0.6.2 + docstring-parser==0.18.0 + docutils==0.22.4 + dparse==0.6.4 + edam-ontology==1.25.3 + email-validator==2.3.0 + et-xmlfile==2.0.0 + eval-type-backport==0.3.1 + exceptiongroup==1.3.1 + executing==2.2.1 + fastapi==0.136.3 + fastavro==1.12.2 + fastmcp==3.3.1 + fastmcp-slim==3.3.1 + filelock==3.29.0 + fissix==24.4.24 + frozenlist==1.8.0 + fs==2.4.16 + fsspec==2026.4.0 + future==1.0.0 + genai-prices==0.0.60 + google-api-core==2.30.3 + google-auth==2.53.0 + google-cloud-batch==0.21.0 + google-genai==2.3.0 + googleapis-common-protos==1.75.0 + gravity==1.2.4 + griffelib==2.0.2 + groq==1.2.0 + grpcio==1.80.0 + grpcio-status==1.80.0 + gunicorn==26.0.0 + gxformat2==0.27.0 + h11==0.16.0 + h5grove==4.0.0 + h5py==3.16.0 + hf-xet==1.5.0 + httpcore==1.0.9 + httpx==0.28.1 + httpx-sse==0.4.3 + huggingface-hub==1.15.0 + humanfriendly==10.0 + idna==3.15 + ijson==3.5.0 + importlib-metadata==8.7.1 + invoke==3.0.3 + isa-rwval==0.10.11 + isal==1.8.0 + jaraco-classes==3.4.0 + jaraco-context==6.1.2 + jaraco-functools==4.5.0 + jinja2==3.1.6 + jiter==0.14.0 + jmespath==1.1.0 + joserfc==1.6.5 + jsonpath-python==1.1.6 + jsonref==1.1.0 + jsonschema==4.26.0 + jsonschema-path==0.4.6 + jsonschema-specifications==2025.9.1 + keyring==25.7.0 + kombu==5.6.2 + lagom==2.7.7 + limits==5.8.0 + logfire==4.33.0 + logfire-api==4.33.0 + lxml==6.1.0 + mako==1.3.12 + markdown==3.10.2 + markdown-it-py==4.2.0 + markupsafe==3.0.3 + mcp==1.27.1 + mdurl==0.1.2 + mercurial==7.2.2 + mistralai==2.4.5 + mistune==3.2.1 + more-itertools==11.0.2 + mrcfile==1.5.4 + msal==1.36.0 + msgpack==1.1.2 + multidict==6.7.1 + mypy-extensions==1.1.0 + networkx==3.6.1 + nexus-rpc==1.4.0 + nodejs-wheel==22.20.0 + nodejs-wheel-binaries==22.20.0 + numpy==2.4.5 + oauthlib==3.3.1 + openai==2.37.0 + openapi-pydantic==0.5.1 + openpyxl==3.1.5 + opentelemetry-api==1.39.1 + opentelemetry-exporter-otlp-proto-common==1.39.1 + opentelemetry-exporter-otlp-proto-http==1.39.1 + opentelemetry-instrumentation==0.60b1 + opentelemetry-instrumentation-httpx==0.60b1 + opentelemetry-proto==1.39.1 + opentelemetry-sdk==1.39.1 + opentelemetry-semantic-conventions==0.60b1 + opentelemetry-util-http==0.60b1 + orjson==3.11.9 + packaging==25.0 + paramiko==5.0.0 + parsley==1.3 + paste==3.10.1 + pastedeploy==3.1.0 + pathable==0.5.0 + pebble==5.2.0 + pillow==12.2.0 + platformdirs==4.9.6 + prompt-toolkit==3.0.52 + propcache==0.5.2 + proto-plus==1.28.0 + protobuf==6.33.6 + prov==1.5.1 + psutil==7.2.2 + pulsar-galaxy-lib==0.15.15 + pulsar-relay-client==0.2.2 + py-key-value-aio==0.4.4 + pyasn1==0.6.3 + pyasn1-modules==0.4.2 + pycparser==3.0 + pycryptodome==3.23.0 + pydantic==2.13.4 + pydantic-ai==1.99.0 + pydantic-ai-slim==1.99.0 + pydantic-core==2.46.4 + pydantic-evals==1.99.0 + pydantic-extra-types==2.11.1 + pydantic-graph==1.99.0 + pydantic-handlebars==0.1.0 + pydantic-settings==2.14.1 + pydantic-tes==0.4.0 + pydicom==3.0.2 + pydot==4.0.1 + pyeventsystem==0.1.0 + pyfaidx==0.9.0.4 + pygments==2.20.0 + pyjwt==2.12.1 + pykwalify==1.8.0 + pylibmagic==0.5.0 + pynacl==1.6.2 + pyparsing==3.3.2 + pyperclip==1.11.0 + pypng==0.20220715.0 + pysam==0.24.0 + python-dateutil==2.9.0.post0 + python-dotenv==1.2.2 + python-magic==0.4.27 + python-multipart==0.0.29 + python-slugify==8.0.4 + python3-openid==3.2.0 + pytz==2026.2 + pyyaml==6.0.3 + pyzmq==27.1.0 + quickjs-ng==0.16.2.1 + rdflib==7.6.0 + referencing==0.37.0 + refgenconf==0.13.1 + regex==2026.5.9 + repoze-lru==0.7 + requests==2.34.2 + requests-oauthlib==2.0.0 + requests-toolbelt==1.0.0 + requests-unixsocket==0.4.1 + rich==13.9.4 + rich-argparse==1.8.0 + rich-rst==1.3.2 + rocrate==0.14.2 + routes==2.5.1 + rpds-py==0.30.0 + ruamel-yaml==0.19.1 + s3fs==2026.4.0 + s3transfer==0.17.0 + schema-salad==8.9.20260417192335 + setuptools==81.0.0 + shellingham==1.5.4 + six==1.17.0 + slowapi==0.1.9 + sniffio==1.3.1 + social-auth-core==4.9.1 + sortedcontainers==2.4.0 + spython==0.3.14 + sqlalchemy==2.0.49 + sqlparse==0.5.5 + sse-starlette==3.4.4 + starlette==1.1.0 + starlette-context==0.5.1 + supervisor==4.3.0 + svgwrite==1.4.3 + temporalio==1.27.2 + tenacity==9.1.4 + text-unidecode==1.3 + tifffile==2026.5.15 + tiktoken==0.13.0 + tinydb==4.8.2 + tokenizers==0.23.1 + tornado==6.5.5 + tqdm==4.67.3 + tuspy==1.1.0 + tuspyserver==4.2.5 + typer==0.25.1 + types-protobuf==6.32.1.20260221 + types-requests==2.33.0.20260513 + typing-extensions==4.15.0 + typing-inspection==0.4.2 + tzdata==2026.2 + tzlocal==5.3.1 + ubiquerg==0.9.3 + uncalled-for==0.3.2 + urllib3==2.7.0 + uvicorn==0.47.0 + uvloop==0.22.1 + vine==5.1.0 + watchfiles==1.1.1 + wcwidth==0.7.0 + webencodings==0.5.1 + webob==1.8.9 + websockets==16.0 + whoosh==2.7.4 + wrapt==1.17.3 + xai-sdk==1.12.2 + yacman==1.0.0 + yarl==1.23.0 + zipp==3.23.1 + zipstream-new==1.1.8 + zstandard==0.25.0 Trying to resolve path for the 'email_ban_file' option but it's empty/None The Galaxy client build is being skipped due to the SKIP_CLIENT_BUILD environment variable. Starting Galaxy with command [cd /private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev && if [ -d .venv ]; then GALAXY_VIRTUAL_ENV=.venv; else GALAXY_VIRTUAL_ENV=/Users/mvandenb/src/worktrees/.planemo-home/.planemo/gx_venv_3.12_release_26.1; fi && export GALAXY_VIRTUAL_ENV && if [ ! -e "$GALAXY_VIRTUAL_ENV" ]; then /Users/mvandenb/.local/bin/virtualenv $GALAXY_VIRTUAL_ENV -p /opt/homebrew/bin/python3.12; echo "Created virtualenv"; fi && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then . "$GALAXY_VIRTUAL_ENV"/bin/activate; echo "Activated a virtualenv for Galaxy"; echo "$VIRTUAL_ENV"; else echo "Failed to activate virtualenv."; fi && /private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/run.sh $COMMON_STARTUP_ARGS --daemon] galaxy.util.commands WARNING: Passing program arguments as a string may be a security hazard if combined with untrusted input Activated a virtualenv for Galaxy /Users/mvandenb/src/worktrees/.planemo-home/.planemo/gx_venv_3.12_release_26.1 Activating virtualenv at /Users/mvandenb/src/worktrees/.planemo-home/.planemo/gx_venv_3.12_release_26.1 Using Python 3.12.13 environment at: /Users/mvandenb/src/worktrees/.planemo-home/.planemo/gx_venv_3.12_release_26.1 Checked 313 packages in 89ms Option master_api_key has been deprecated in favor of bootstrap_admin_api_key Trying to resolve path for the 'email_ban_file' option but it's empty/None Trying to resolve path for the 'data_manager_config_file' option but it's empty/None Using Python 3.12.13 environment at: /Users/mvandenb/src/worktrees/.planemo-home/.planemo/gx_venv_3.12_release_26.1 Using Python 3.12.13 environment at: /Users/mvandenb/src/worktrees/.planemo-home/.planemo/gx_venv_3.12_release_26.1 Resolved 1 package in 98ms Prepared 1 package in 54ms Installed 1 package in 3ms + watchdog==6.0.0 The Galaxy client build is being skipped due to the SKIP_CLIENT_BUILD environment variable. Activating virtualenv at /Users/mvandenb/src/worktrees/.planemo-home/.planemo/gx_venv_3.12_release_26.1 galaxy.tool_util.deps.conda_util INFO 2026-09-17 00:06:31,255 [pN:MainProcess,p:31199,tN:MainThread] Installing conda, this may take several minutes. PREFIX=/Users/mvandenb/src/worktrees/.planemo-home/conda Unpacking bootstrapper... Unpacking payload... Extracting bzip2-1.0.8-h4e30115_10.conda Extracting c-ares-1.34.8-h74c22ad_2.conda Extracting ca-certificates-2026.7.22-hbd8a1cb_0.conda Extracting icu-78.3-py310h579977c_2.conda Extracting libcxx-23.1.1-h55c6f16_0.conda Extracting libev-4.33-h1a92334_3.conda Extracting libexpat-2.8.1-hf6b4638_1.conda Extracting libffi-3.7.0-h47dc5ef_1.conda Extracting libiconv-1.18-he4c29f2_3.conda Extracting liblzma-5.8.3-h8088a28_1.conda Extracting libmpdec-4.0.0-h84a0fba_2.conda Extracting libzlib-1.3.2-h8088a28_3.conda Extracting lzo-2.10-h74c22ad_1003.conda Extracting ncurses-6.6-he64c551_1.conda Extracting nlohmann_json-abi-3.12.0-h0f90c79_2.conda Extracting pybind11-abi-11-hc364b38_1.conda Extracting python_abi-3.14-9_cp314.conda Extracting reproc-14.2.8.post0-hdca3b7d_0.conda Extracting tzdata-2026c-h151e31d_0.conda Extracting cpp-expected-1.3.1-h3feff0a_1.conda Extracting fmt-12.1.0-h99e4e11_1.conda Extracting libedit-3.1.20250104-pl5321h26f1114_1.conda Extracting libmsgpack-c-6.1.0-h784d473_7.conda Extracting libpsl-0.23.1-hdb0c161_1.conda Extracting libpython-3.14.7-h4311e70_106_cp314.conda Extracting libsolv-0.7.39-h626c152_1.conda Extracting libsqlite-3.53.4-hca69786_1.conda Extracting libxml2-16-2.15.4-heb56d2d_0.conda Extracting lz4-c-1.10.0-hdca3b7d_2.conda Extracting openssl-3.6.4-h55eecbc_0.conda Extracting readline-8.3-h8b90a29_1.conda Extracting reproc-cpp-14.2.8.post0-h2fd3d4c_0.conda Extracting simdjson-4.6.11-hfbe1efa_0.conda Extracting tk-8.6.13-hbeba79b_4.conda Extracting yaml-cpp-0.8.0-h784d473_1.conda Extracting zstd-1.5.7-hf451053_7.conda Extracting krb5-1.22.2-h34f8a20_2.conda Extracting libnghttp2-1.68.1-h435687b_1.conda Extracting libssh2-1.11.1-hbf2880b_1.conda Extracting libxml2-2.15.4-h550178d_0.conda Extracting python-3.14.7-h0ae1c2c_106_cp314.conda Extracting spdlog-1.17.0-h760df91_2.conda Extracting libarchive-3.8.9-gpl_h76147b0_101.conda Extracting libcurl-8.22.0-h6651222_0.conda Extracting tomli-w-1.2.0-pyhd8ed1ab_0.conda Extracting libmamba-2.9.0-py314h12d839b_0.conda Extracting menuinst-2.5.2-py314h6ffbfce_2.conda Extracting archspec-0.2.5-pyhd8ed1ab_0.conda Extracting backports.zstd-1.7.0-py314h680f03e_1.conda Extracting boltons-26.2.0-pyhd8ed1ab_0.conda Extracting brotli-python-1.2.0-py314hee34562_4.conda Extracting cached_property-2.0.1-pyhcf101f3_0.conda Extracting certifi-2026.7.22-pyhd8ed1ab_0.conda Extracting charset-normalizer-3.5.1-pyhd8ed1ab_0.conda Extracting colorama-0.4.6-pyhd8ed1ab_1.conda Extracting cpython-3.14.7-py314hd8ed1ab_106.conda Extracting distro-1.9.0-pyhd8ed1ab_1.conda Extracting frozendict-2.4.7-pyh851646a_2.conda Extracting hpack-4.2.0-pyhd8ed1ab_0.conda Extracting hyperframe-6.1.0-pyhd8ed1ab_0.conda Extracting idna-3.19-pyhcf101f3_0.conda Extracting libmamba-spdlog-2.9.0-h7215443_0.conda Extracting mamba-2.9.0-hfb6e983_0.conda Extracting markupsafe-3.0.3-py314h6e9b3f0_1.conda Extracting msgpack-python-1.2.2-py314hb1acb19_2.conda Extracting packaging-26.3-pyhc364b38_0.conda Extracting pip-26.2.1-pyh145f28c_0.conda Extracting platformdirs-4.11.6-pyh5ded981_0.conda Extracting pluggy-1.6.0-pyhf9edf01_1.conda Extracting pycosat-0.6.6-py314hcd3153d_5.conda Extracting pysocks-1.7.1-pyha55dd90_7.conda Extracting python-installer-1.0.1-pyh332efcf_0.conda Extracting ruamel.yaml.clib-0.2.15-py314hd98292b_5.conda Extracting setuptools-84.0.0-pyh332efcf_0.conda Extracting sniffio-1.3.1-pyhd8ed1ab_2.conda Extracting tomli-2.4.1-pyhcf101f3_0.conda Extracting tqdm-4.70.0-pyh8f84b5b_0.conda Extracting truststore-0.10.4-pyhcf101f3_0.conda Extracting typing_extensions-4.16.0-pyhcf101f3_0.conda Extracting zipp-4.1.0-pyhcf101f3_0.conda Extracting anyio-4.15.1-pyh5ded981_1.conda Extracting cached-property-2.0.1-pyhcf101f3_0.conda Extracting conda-package-streaming-0.13.0-pyhd8ed1ab_0.conda Extracting h11-0.16.0-pyhcf101f3_1.conda Extracting h2-4.4.1-pyhcf101f3_0.conda Extracting importlib-metadata-9.0.1-pyhcf101f3_0.conda Extracting jinja2-3.1.6-pyhcf101f3_1.conda Extracting libmambapy-2.9.0-py314h53f8b30_0.conda Extracting pyproject_hooks-1.2.0-pyhd8ed1ab_1.conda Extracting python-gil-3.14.7-h4df99d1_106.conda Extracting ruamel.yaml-0.19.1-pyhcf101f3_0.conda Extracting typing-extensions-4.16.0-h69aa097_0.conda Extracting typing-inspection-0.4.4-pyhcf101f3_0.conda Extracting _python_abi3_support-1.0-hd8ed1ab_3.conda Extracting annotated-types-0.8.0-pyhd8ed1ab_0.conda Extracting conda-libmamba-solver-26.7.0-pyhcf101f3_0.conda Extracting httpcore-1.0.9-pyh29332c3_0.conda Extracting pydantic-core-2.46.5-py314hc05cd11_1.conda Extracting python-build-1.6.0-pyhc364b38_0.conda Extracting urllib3-2.7.0-pyhd8ed1ab_0.conda Extracting httpx-0.28.1-pyhd8ed1ab_0.conda Extracting py-rattler-0.25.0-py310h2dd3e6a_5.conda Extracting pydantic-2.13.5-pyhcf101f3_0.conda Extracting requests-2.34.2-pyhcf101f3_0.conda Extracting conda-package-handling-2.6.0-pyh5ded981_0.conda Extracting unearth-0.18.3-pyhd8ed1ab_0.conda Extracting conda-index-0.13.0-pyh5ded981_0.conda Extracting conda-pypi-0.11.0-pyh5ded981_2.conda Extracting conda-lockfiles-0.2.1-pyhd8ed1ab_0.conda Extracting conda-rattler-solver-0.1.1-pyhcf101f3_0.conda Extracting conda-self-0.2.1-pyhd8ed1ab_0.conda Extracting conda-26.7.2-py314hcec6336_1.conda Installing base environment... Transaction Prefix: /Users/mvandenb/src/worktrees/.planemo-home/conda Updating specs: - bzip2==1.0.8=h4e30115_10 - c-ares==1.34.8=h74c22ad_2 - ca-certificates==2026.7.22=hbd8a1cb_0 - icu==78.3=py310h579977c_2 - libcxx==23.1.1=h55c6f16_0 - libev==4.33=h1a92334_3 - libexpat==2.8.1=hf6b4638_1 - libffi==3.7.0=h47dc5ef_1 - libiconv==1.18=he4c29f2_3 - liblzma==5.8.3=h8088a28_1 - libmpdec==4.0.0=h84a0fba_2 - libzlib==1.3.2=h8088a28_3 - lzo==2.10=h74c22ad_1003 - ncurses==6.6=he64c551_1 - nlohmann_json-abi==3.12.0=h0f90c79_2 - pybind11-abi==11=hc364b38_1 - python_abi==3.14=9_cp314 - reproc==14.2.8.post0=hdca3b7d_0 - tzdata==2026c=h151e31d_0 - cpp-expected==1.3.1=h3feff0a_1 - fmt==12.1.0=h99e4e11_1 - libedit==3.1.20250104=pl5321h26f1114_1 - libmsgpack-c==6.1.0=h784d473_7 - libpsl==0.23.1=hdb0c161_1 - libpython==3.14.7=h4311e70_106_cp314 - libsolv==0.7.39=h626c152_1 - libsqlite==3.53.4=hca69786_1 - libxml2-16==2.15.4=heb56d2d_0 - lz4-c==1.10.0=hdca3b7d_2 - openssl==3.6.4=h55eecbc_0 - readline==8.3=h8b90a29_1 - reproc-cpp==14.2.8.post0=h2fd3d4c_0 - simdjson==4.6.11=hfbe1efa_0 - tk==8.6.13=hbeba79b_4 - yaml-cpp==0.8.0=h784d473_1 - zstd==1.5.7=hf451053_7 - krb5==1.22.2=h34f8a20_2 - libnghttp2==1.68.1=h435687b_1 - libssh2==1.11.1=hbf2880b_1 - libxml2==2.15.4=h550178d_0 - python==3.14.7=h0ae1c2c_106_cp314 - spdlog==1.17.0=h760df91_2 - libarchive==3.8.9=gpl_h76147b0_101 - libcurl==8.22.0=h6651222_0 - tomli-w==1.2.0=pyhd8ed1ab_0 - libmamba==2.9.0=py314h12d839b_0 - menuinst==2.5.2=py314h6ffbfce_2 - archspec==0.2.5=pyhd8ed1ab_0 - backports.zstd==1.7.0=py314h680f03e_1 - boltons==26.2.0=pyhd8ed1ab_0 - brotli-python==1.2.0=py314hee34562_4 - cached_property==2.0.1=pyhcf101f3_0 - certifi==2026.7.22=pyhd8ed1ab_0 - charset-normalizer==3.5.1=pyhd8ed1ab_0 - colorama==0.4.6=pyhd8ed1ab_1 - cpython==3.14.7=py314hd8ed1ab_106 - distro==1.9.0=pyhd8ed1ab_1 - frozendict==2.4.7=pyh851646a_2 - hpack==4.2.0=pyhd8ed1ab_0 - hyperframe==6.1.0=pyhd8ed1ab_0 - idna==3.19=pyhcf101f3_0 - libmamba-spdlog==2.9.0=h7215443_0 - mamba==2.9.0=hfb6e983_0 - markupsafe==3.0.3=py314h6e9b3f0_1 - msgpack-python==1.2.2=py314hb1acb19_2 - packaging==26.3=pyhc364b38_0 - pip==26.2.1=pyh145f28c_0 - platformdirs==4.11.6=pyh5ded981_0 - pluggy==1.6.0=pyhf9edf01_1 - pycosat==0.6.6=py314hcd3153d_5 - pysocks==1.7.1=pyha55dd90_7 - python-installer==1.0.1=pyh332efcf_0 - ruamel.yaml.clib==0.2.15=py314hd98292b_5 - setuptools==84.0.0=pyh332efcf_0 - sniffio==1.3.1=pyhd8ed1ab_2 - tomli==2.4.1=pyhcf101f3_0 - tqdm==4.70.0=pyh8f84b5b_0 - truststore==0.10.4=pyhcf101f3_0 - typing_extensions==4.16.0=pyhcf101f3_0 - zipp==4.1.0=pyhcf101f3_0 - anyio==4.15.1=pyh5ded981_1 - cached-property==2.0.1=pyhcf101f3_0 - conda-package-streaming==0.13.0=pyhd8ed1ab_0 - h11==0.16.0=pyhcf101f3_1 - h2==4.4.1=pyhcf101f3_0 - importlib-metadata==9.0.1=pyhcf101f3_0 - jinja2==3.1.6=pyhcf101f3_1 - libmambapy==2.9.0=py314h53f8b30_0 - pyproject_hooks==1.2.0=pyhd8ed1ab_1 - python-gil==3.14.7=h4df99d1_106 - ruamel.yaml==0.19.1=pyhcf101f3_0 - typing-extensions==4.16.0=h69aa097_0 - typing-inspection==0.4.4=pyhcf101f3_0 - _python_abi3_support==1.0=hd8ed1ab_3 - annotated-types==0.8.0=pyhd8ed1ab_0 - conda-libmamba-solver==26.7.0=pyhcf101f3_0 - httpcore==1.0.9=pyh29332c3_0 - pydantic-core==2.46.5=py314hc05cd11_1 - python-build==1.6.0=pyhc364b38_0 - urllib3==2.7.0=pyhd8ed1ab_0 - httpx==0.28.1=pyhd8ed1ab_0 - py-rattler==0.25.0=py310h2dd3e6a_5 - pydantic==2.13.5=pyhcf101f3_0 - requests==2.34.2=pyhcf101f3_0 - conda-package-handling==2.6.0=pyh5ded981_0 - unearth==0.18.3=pyhd8ed1ab_0 - conda-index==0.13.0=pyh5ded981_0 - conda-pypi==0.11.0=pyh5ded981_2 - conda-lockfiles==0.2.1=pyhd8ed1ab_0 - conda-rattler-solver==0.1.1=pyhcf101f3_0 - conda-self==0.2.1=pyhd8ed1ab_0 - conda==26.7.2=py314hcec6336_1 Package Version Build Channel Size ───────────────────────────────────────────────────────────────────────────────────── Install: ───────────────────────────────────────────────────────────────────────────────────── + _python_abi3_support 1.0 hd8ed1ab_3 conda-forge + annotated-types 0.8.0 pyhd8ed1ab_0 conda-forge + anyio 4.15.1 pyh5ded981_1 conda-forge + archspec 0.2.5 pyhd8ed1ab_0 conda-forge + backports.zstd 1.7.0 py314h680f03e_1 conda-forge + boltons 26.2.0 pyhd8ed1ab_0 conda-forge + brotli-python 1.2.0 py314hee34562_4 conda-forge + bzip2 1.0.8 h4e30115_10 conda-forge + c-ares 1.34.8 h74c22ad_2 conda-forge + ca-certificates 2026.7.22 hbd8a1cb_0 conda-forge + cached-property 2.0.1 pyhcf101f3_0 conda-forge + cached_property 2.0.1 pyhcf101f3_0 conda-forge + certifi 2026.7.22 pyhd8ed1ab_0 conda-forge + charset-normalizer 3.5.1 pyhd8ed1ab_0 conda-forge + colorama 0.4.6 pyhd8ed1ab_1 conda-forge + conda 26.7.2 py314hcec6336_1 conda-forge + conda-index 0.13.0 pyh5ded981_0 conda-forge + conda-libmamba-solver 26.7.0 pyhcf101f3_0 conda-forge + conda-lockfiles 0.2.1 pyhd8ed1ab_0 conda-forge + conda-package-handling 2.6.0 pyh5ded981_0 conda-forge + conda-package-streaming 0.13.0 pyhd8ed1ab_0 conda-forge + conda-pypi 0.11.0 pyh5ded981_2 conda-forge + conda-rattler-solver 0.1.1 pyhcf101f3_0 conda-forge + conda-self 0.2.1 pyhd8ed1ab_0 conda-forge + cpp-expected 1.3.1 h3feff0a_1 conda-forge + cpython 3.14.7 py314hd8ed1ab_106 conda-forge + distro 1.9.0 pyhd8ed1ab_1 conda-forge + fmt 12.1.0 h99e4e11_1 conda-forge + frozendict 2.4.7 pyh851646a_2 conda-forge + h11 0.16.0 pyhcf101f3_1 conda-forge + h2 4.4.1 pyhcf101f3_0 conda-forge + hpack 4.2.0 pyhd8ed1ab_0 conda-forge + httpcore 1.0.9 pyh29332c3_0 conda-forge + httpx 0.28.1 pyhd8ed1ab_0 conda-forge + hyperframe 6.1.0 pyhd8ed1ab_0 conda-forge + icu 78.3 py310h579977c_2 conda-forge + idna 3.19 pyhcf101f3_0 conda-forge + importlib-metadata 9.0.1 pyhcf101f3_0 conda-forge + jinja2 3.1.6 pyhcf101f3_1 conda-forge + krb5 1.22.2 h34f8a20_2 conda-forge + libarchive 3.8.9 gpl_h76147b0_101 conda-forge + libcurl 8.22.0 h6651222_0 conda-forge + libcxx 23.1.1 h55c6f16_0 conda-forge + libedit 3.1.20250104 pl5321h26f1114_1 conda-forge + libev 4.33 h1a92334_3 conda-forge + libexpat 2.8.1 hf6b4638_1 conda-forge + libffi 3.7.0 h47dc5ef_1 conda-forge + libiconv 1.18 he4c29f2_3 conda-forge + liblzma 5.8.3 h8088a28_1 conda-forge + libmamba 2.9.0 py314h12d839b_0 conda-forge + libmamba-spdlog 2.9.0 h7215443_0 conda-forge + libmambapy 2.9.0 py314h53f8b30_0 conda-forge + libmpdec 4.0.0 h84a0fba_2 conda-forge + libmsgpack-c 6.1.0 h784d473_7 conda-forge + libnghttp2 1.68.1 h435687b_1 conda-forge + libpsl 0.23.1 hdb0c161_1 conda-forge + libpython 3.14.7 h4311e70_106_cp314 conda-forge + libsolv 0.7.39 h626c152_1 conda-forge + libsqlite 3.53.4 hca69786_1 conda-forge + libssh2 1.11.1 hbf2880b_1 conda-forge + libxml2 2.15.4 h550178d_0 conda-forge + libxml2-16 2.15.4 heb56d2d_0 conda-forge + libzlib 1.3.2 h8088a28_3 conda-forge + lz4-c 1.10.0 hdca3b7d_2 conda-forge + lzo 2.10 h74c22ad_1003 conda-forge + mamba 2.9.0 hfb6e983_0 conda-forge + markupsafe 3.0.3 py314h6e9b3f0_1 conda-forge + menuinst 2.5.2 py314h6ffbfce_2 conda-forge + msgpack-python 1.2.2 py314hb1acb19_2 conda-forge + ncurses 6.6 he64c551_1 conda-forge + nlohmann_json-abi 3.12.0 h0f90c79_2 conda-forge + openssl 3.6.4 h55eecbc_0 conda-forge + packaging 26.3 pyhc364b38_0 conda-forge + pip 26.2.1 pyh145f28c_0 conda-forge + platformdirs 4.11.6 pyh5ded981_0 conda-forge + pluggy 1.6.0 pyhf9edf01_1 conda-forge + py-rattler 0.25.0 py310h2dd3e6a_5 conda-forge + pybind11-abi 11 hc364b38_1 conda-forge + pycosat 0.6.6 py314hcd3153d_5 conda-forge + pydantic 2.13.5 pyhcf101f3_0 conda-forge + pydantic-core 2.46.5 py314hc05cd11_1 conda-forge + pyproject_hooks 1.2.0 pyhd8ed1ab_1 conda-forge + pysocks 1.7.1 pyha55dd90_7 conda-forge + python 3.14.7 h0ae1c2c_106_cp314 conda-forge + python-build 1.6.0 pyhc364b38_0 conda-forge + python-gil 3.14.7 h4df99d1_106 conda-forge + python-installer 1.0.1 pyh332efcf_0 conda-forge + python_abi 3.14 9_cp314 conda-forge + readline 8.3 h8b90a29_1 conda-forge + reproc 14.2.8.post0 hdca3b7d_0 conda-forge + reproc-cpp 14.2.8.post0 h2fd3d4c_0 conda-forge + requests 2.34.2 pyhcf101f3_0 conda-forge + ruamel.yaml 0.19.1 pyhcf101f3_0 conda-forge + ruamel.yaml.clib 0.2.15 py314hd98292b_5 conda-forge + setuptools 84.0.0 pyh332efcf_0 conda-forge + simdjson 4.6.11 hfbe1efa_0 conda-forge + sniffio 1.3.1 pyhd8ed1ab_2 conda-forge + spdlog 1.17.0 h760df91_2 conda-forge + tk 8.6.13 hbeba79b_4 conda-forge + tomli 2.4.1 pyhcf101f3_0 conda-forge + tomli-w 1.2.0 pyhd8ed1ab_0 conda-forge + tqdm 4.70.0 pyh8f84b5b_0 conda-forge + truststore 0.10.4 pyhcf101f3_0 conda-forge + typing-extensions 4.16.0 h69aa097_0 conda-forge + typing-inspection 0.4.4 pyhcf101f3_0 conda-forge + typing_extensions 4.16.0 pyhcf101f3_0 conda-forge + tzdata 2026c h151e31d_0 conda-forge + unearth 0.18.3 pyhd8ed1ab_0 conda-forge + urllib3 2.7.0 pyhd8ed1ab_0 conda-forge + yaml-cpp 0.8.0 h784d473_1 conda-forge + zipp 4.1.0 pyhcf101f3_0 conda-forge + zstd 1.5.7 hf451053_7 conda-forge Summary: Install: 112 packages Total download: 0 B ───────────────────────────────────────────────────────────────────────────────────── warning libmamba Security Warning: This transaction includes executing package scripts (pre/post-link/unlink) if present. These scripts can contain arbitrary code. Please ensure you trust the package sources. Transaction starting Linking bzip2-1.0.8-h4e30115_10 Linking c-ares-1.34.8-h74c22ad_2 Linking ca-certificates-2026.7.22-hbd8a1cb_0 Linking icu-78.3-py310h579977c_2 Linking libcxx-23.1.1-h55c6f16_0 Linking libev-4.33-h1a92334_3 Linking libexpat-2.8.1-hf6b4638_1 Linking libffi-3.7.0-h47dc5ef_1 Linking libiconv-1.18-he4c29f2_3 Linking liblzma-5.8.3-h8088a28_1 Linking libmpdec-4.0.0-h84a0fba_2 Linking libzlib-1.3.2-h8088a28_3 Linking lzo-2.10-h74c22ad_1003 Linking ncurses-6.6-he64c551_1 Linking nlohmann_json-abi-3.12.0-h0f90c79_2 Linking pybind11-abi-11-hc364b38_1 Linking python_abi-3.14-9_cp314 Linking reproc-14.2.8.post0-hdca3b7d_0 Linking tzdata-2026c-h151e31d_0 Linking cpp-expected-1.3.1-h3feff0a_1 Linking fmt-12.1.0-h99e4e11_1 Linking libedit-3.1.20250104-pl5321h26f1114_1 Linking libmsgpack-c-6.1.0-h784d473_7 Linking libpsl-0.23.1-hdb0c161_1 Linking libpython-3.14.7-h4311e70_106_cp314 Linking libsolv-0.7.39-h626c152_1 Linking libsqlite-3.53.4-hca69786_1 Linking libxml2-16-2.15.4-heb56d2d_0 Linking lz4-c-1.10.0-hdca3b7d_2 Linking openssl-3.6.4-h55eecbc_0 Linking readline-8.3-h8b90a29_1 Linking reproc-cpp-14.2.8.post0-h2fd3d4c_0 Linking simdjson-4.6.11-hfbe1efa_0 Linking tk-8.6.13-hbeba79b_4 Linking yaml-cpp-0.8.0-h784d473_1 Linking zstd-1.5.7-hf451053_7 Linking krb5-1.22.2-h34f8a20_2 Linking libnghttp2-1.68.1-h435687b_1 Linking libssh2-1.11.1-hbf2880b_1 Linking libxml2-2.15.4-h550178d_0 Linking python-3.14.7-h0ae1c2c_106_cp314 Linking spdlog-1.17.0-h760df91_2 Linking libarchive-3.8.9-gpl_h76147b0_101 Linking libcurl-8.22.0-h6651222_0 Linking tomli-w-1.2.0-pyhd8ed1ab_0 Linking libmamba-2.9.0-py314h12d839b_0 Linking menuinst-2.5.2-py314h6ffbfce_2 Linking archspec-0.2.5-pyhd8ed1ab_0 Linking backports.zstd-1.7.0-py314h680f03e_1 Linking boltons-26.2.0-pyhd8ed1ab_0 Linking brotli-python-1.2.0-py314hee34562_4 Linking cached_property-2.0.1-pyhcf101f3_0 Linking certifi-2026.7.22-pyhd8ed1ab_0 Linking charset-normalizer-3.5.1-pyhd8ed1ab_0 Linking colorama-0.4.6-pyhd8ed1ab_1 Linking cpython-3.14.7-py314hd8ed1ab_106 Linking distro-1.9.0-pyhd8ed1ab_1 Linking frozendict-2.4.7-pyh851646a_2 Linking hpack-4.2.0-pyhd8ed1ab_0 Linking hyperframe-6.1.0-pyhd8ed1ab_0 Linking idna-3.19-pyhcf101f3_0 Linking libmamba-spdlog-2.9.0-h7215443_0 Linking mamba-2.9.0-hfb6e983_0 Linking markupsafe-3.0.3-py314h6e9b3f0_1 Linking msgpack-python-1.2.2-py314hb1acb19_2 Linking packaging-26.3-pyhc364b38_0 Linking pip-26.2.1-pyh145f28c_0 Linking platformdirs-4.11.6-pyh5ded981_0 Linking pluggy-1.6.0-pyhf9edf01_1 Linking pycosat-0.6.6-py314hcd3153d_5 Linking pysocks-1.7.1-pyha55dd90_7 Linking python-installer-1.0.1-pyh332efcf_0 Linking ruamel.yaml.clib-0.2.15-py314hd98292b_5 Linking setuptools-84.0.0-pyh332efcf_0 Linking sniffio-1.3.1-pyhd8ed1ab_2 Linking tomli-2.4.1-pyhcf101f3_0 Linking tqdm-4.70.0-pyh8f84b5b_0 Linking truststore-0.10.4-pyhcf101f3_0 Linking typing_extensions-4.16.0-pyhcf101f3_0 Linking zipp-4.1.0-pyhcf101f3_0 Linking anyio-4.15.1-pyh5ded981_1 Linking cached-property-2.0.1-pyhcf101f3_0 Linking conda-package-streaming-0.13.0-pyhd8ed1ab_0 Linking h11-0.16.0-pyhcf101f3_1 Linking h2-4.4.1-pyhcf101f3_0 Linking importlib-metadata-9.0.1-pyhcf101f3_0 Linking jinja2-3.1.6-pyhcf101f3_1 Linking libmambapy-2.9.0-py314h53f8b30_0 Linking pyproject_hooks-1.2.0-pyhd8ed1ab_1 Linking python-gil-3.14.7-h4df99d1_106 Linking ruamel.yaml-0.19.1-pyhcf101f3_0 Linking typing-extensions-4.16.0-h69aa097_0 Linking typing-inspection-0.4.4-pyhcf101f3_0 Linking _python_abi3_support-1.0-hd8ed1ab_3 Linking annotated-types-0.8.0-pyhd8ed1ab_0 Linking conda-libmamba-solver-26.7.0-pyhcf101f3_0 Linking httpcore-1.0.9-pyh29332c3_0 Linking pydantic-core-2.46.5-py314hc05cd11_1 Linking python-build-1.6.0-pyhc364b38_0 Linking urllib3-2.7.0-pyhd8ed1ab_0 Linking httpx-0.28.1-pyhd8ed1ab_0 Linking py-rattler-0.25.0-py310h2dd3e6a_5 Linking pydantic-2.13.5-pyhcf101f3_0 Linking requests-2.34.2-pyhcf101f3_0 Linking conda-package-handling-2.6.0-pyh5ded981_0 Linking unearth-0.18.3-pyhd8ed1ab_0 Linking conda-index-0.13.0-pyh5ded981_0 Linking conda-pypi-0.11.0-pyh5ded981_2 Linking conda-lockfiles-0.2.1-pyhd8ed1ab_0 Linking conda-rattler-solver-0.1.1-pyhcf101f3_0 Linking conda-self-0.2.1-pyhd8ed1ab_0 Linking conda-26.7.2-py314hcec6336_1 Transaction finished Retrieving notices: ...working... done Channels: - conda-forge - bioconda Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/mvandenb/src/worktrees/.planemo-home/conda added / updated specs: - conda-libmamba-solver - conda[version='>=23.7.0'] - pyopenssl[version='>=22.1.0'] The following packages will be downloaded: package | build ---------------------------|----------------- cffi-2.1.1 | py314h618e29d_3 286 KB conda-forge cryptography-50.0.1 | py311hc28ac56_1 1.7 MB conda-forge pycparser-3.0 | pyhcf101f3_0 55 KB conda-forge pyopenssl-26.4.0 | pyhcf101f3_0 127 KB conda-forge ------------------------------------------------------------ Total: 2.1 MB The following NEW packages will be INSTALLED: cffi conda-forge/osx-arm64::cffi-2.1.1-py314h618e29d_3 cryptography conda-forge/osx-arm64::cryptography-50.0.1-py311hc28ac56_1 pycparser conda-forge/noarch::pycparser-3.0-pyhcf101f3_0 pyopenssl conda-forge/noarch::pyopenssl-26.4.0-pyhcf101f3_0 Downloading and Extracting Packages: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Executing: galaxyctl start Adding service gunicorn supervisord is not running Adding service celery supervisord is not running Adding service celery-beat supervisord is not running Adding service gx-it-proxy supervisord is not running celery STARTING celery-beat STARTING gunicorn STARTING gx-it-proxy STARTING Log files are in /private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/gravity/log galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,759 [pN:main,p:33472,tN:MainThread] Loading datatypes from /private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/lib/galaxy/config/sample/datatypes_conf.xml.sample galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,759 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,759 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,759 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,760 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,760 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,760 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,760 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,760 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markdown. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,760 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension rmd. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,761 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,761 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,761 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,761 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension a2m. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,763 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,765 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,766 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension alto. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,766 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension page.xml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,766 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension abbyy.xml. galaxy.datatypes.registry ERROR 2026-09-17 00:07:36,766 [pN:main,p:33472,tN:MainThread] Error importing datatype module galaxy.datatypes.html Traceback (most recent call last): File "/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/lib/galaxy/datatypes/registry.py", line 235, in load_datatypes module = __import__(datatype_module) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'galaxy.datatypes.html' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,769 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,769 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,769 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,769 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,769 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,770 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,770 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,770 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,770 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,770 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,770 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,771 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,771 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,771 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,771 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,771 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Taf from the datatype registry for extension taf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,772 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,772 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,772 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,772 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,772 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,772 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,773 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,773 [pN:main,p:33472,tN:MainThread] Loaded preferred visualization definition: bam -> igv galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,773 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,773 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,773 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,773 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,774 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,774 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,774 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,774 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,774 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,774 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,775 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,775 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,775 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,776 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,776 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,776 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,776 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,776 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension arrow. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,776 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,777 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,777 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,777 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,777 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,777 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,777 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:GeoCSV from the datatype registry for extension geocsv. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,778 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,778 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,778 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,779 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,779 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,779 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,779 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,780 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,780 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,780 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension las. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,780 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension laz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,780 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension pnts. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,780 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,781 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CytoscapeJson from the datatype registry for extension cytoscapejson. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,781 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension freq.json. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,781 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,781 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,781 [pN:main,p:33472,tN:MainThread] Loaded preferred visualization definition: geojson -> openlayers galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,781 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:VitessceJson from the datatype registry for extension vitessce.json. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,782 [pN:main,p:33472,tN:MainThread] Loaded preferred visualization definition: vitessce.json -> vitessce galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,782 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:AuspiceJson from the datatype registry for extension auspice.json. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,782 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:DataManagerJson from the datatype registry for extension data_manager_json. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,782 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,782 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,782 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,783 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,783 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,783 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,783 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,783 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,784 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,784 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,784 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,784 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,784 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,784 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension a3m. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,785 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,785 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,785 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,785 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,785 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,785 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,786 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,786 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,786 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,786 [pN:main,p:33472,tN:MainThread] Loaded preferred visualization definition: h5 -> h5web galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,786 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,787 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,787 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,787 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,787 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5mu. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,787 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,787 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,788 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mzmlb. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,788 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mbi. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,788 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,788 [pN:main,p:33472,tN:MainThread] Loaded preferred visualization definition: hyphy_results.json -> hyphyvision galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,788 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,788 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Hic from the datatype registry for extension hic. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,789 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,789 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,789 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,789 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,789 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,789 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,790 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,790 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,790 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension fastk_ktab. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,790 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension fastk_hist. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,790 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension fastk_prof. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,790 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension fastk_ktab_tar. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:36,791 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Numpy from the datatype registry for extension npy. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,166 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,166 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,167 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,167 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,167 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,167 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,167 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,168 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,168 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,168 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,168 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,168 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,168 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,169 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,169 [pN:main,p:33472,tN:MainThread] Loaded preferred visualization definition: tiff -> tiffviewer galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,169 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,169 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,169 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,170 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,170 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,170 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,170 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,170 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,170 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Dicom from the datatype registry for extension dcm. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,171 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,171 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,171 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,171 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,171 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,171 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,172 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,172 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,172 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,172 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,172 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,172 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,173 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,173 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,173 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,173 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,173 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,173 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,174 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,176 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,176 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,176 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,176 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,176 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,177 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZarrZipArchive from the datatype registry for extension zarr.zip. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,177 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedOMEZarrZipArchive from the datatype registry for extension ome_zarr.zip. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,177 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SpatialData from the datatype registry for extension spatialdata.zip. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,177 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,177 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,178 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension bwa_index. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,178 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension bwa_mem2_index. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,178 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension egapx_local_cache. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,178 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension lexicmap_index. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,178 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension kmindex. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,178 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:ZarrDirectory from the datatype registry for extension zarr. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,179 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMEZarr from the datatype registry for extension ome_zarr. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,179 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,179 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,183 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,183 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,184 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,184 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,184 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,184 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,184 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,185 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,185 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,185 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,185 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,185 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,185 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,185 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,186 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,186 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,186 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,186 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,186 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,186 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,187 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,187 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,187 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,187 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,187 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,187 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,188 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,188 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,188 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,188 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,188 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,188 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,189 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,189 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,189 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,189 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,189 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,190 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,190 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,190 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,190 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,190 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,190 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,191 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,191 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,191 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,191 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,191 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,191 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,191 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,192 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,192 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,192 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,192 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,192 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,193 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,193 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,193 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,193 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,193 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,193 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,194 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,194 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,194 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,194 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,194 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,195 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,195 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,195 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,195 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,195 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,195 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,196 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveXz from the datatype registry for extension fast5.tar.xz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,196 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pod5 from the datatype registry for extension pod5. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,196 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,196 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,196 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,196 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,197 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,197 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,197 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,197 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,197 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,197 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,198 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,198 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,198 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,198 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,198 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,198 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,199 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension colab.tar. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,200 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,200 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,200 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,200 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,200 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,200 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,201 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,201 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,201 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,201 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,201 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,202 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension amnisflow.cif. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,202 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,203 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,203 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,203 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,203 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,203 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,203 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,204 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,204 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,204 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,204 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,204 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,204 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,205 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,205 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,205 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FourDNPairs from the datatype registry for extension 4dn_pairs. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,205 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FourDNPairsam from the datatype registry for extension 4dn_pairsam. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,205 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,206 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,206 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,206 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,206 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,206 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,206 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,207 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,207 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,207 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,207 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,207 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,207 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,207 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,208 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,208 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,208 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,208 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,208 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,209 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,209 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,209 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,209 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,209 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,209 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,210 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,210 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,210 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,210 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,210 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,210 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,211 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,211 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,211 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,211 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,211 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,211 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Tei from the datatype registry for extension tei. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,212 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,212 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,212 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,212 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,212 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,212 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,213 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,213 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,213 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,213 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,213 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,213 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,214 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension vg.loci. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,214 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension vg.dist. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,214 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension vg.snarls. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,215 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension vg.gamp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,215 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension vg.min. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,215 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension vg.zipcodes. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,215 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension vg.gg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,215 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gbz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,215 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gbwt. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,216 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hal. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,216 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hal.pg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,216 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hal.hg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,216 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,216 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gam. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,216 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,217 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,217 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,217 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,217 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,217 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,217 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,218 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,218 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension bgzip. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,218 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension gwas_bgzip. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,218 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension gwas_tabix.gz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,218 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,218 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,219 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,219 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,219 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,219 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,219 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,220 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,220 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension beast.trees. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,224 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,229 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,229 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,229 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,229 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,229 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,230 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,230 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,230 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,230 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,230 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,230 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,231 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,231 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,231 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,231 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,231 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,231 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,232 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,232 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,232 [pN:main,p:33472,tN:MainThread] Loaded preferred visualization definition: ipynb -> jupyterlite galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,232 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,232 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension tool_markdown. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,232 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,234 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,235 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,236 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,236 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,236 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,237 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,237 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,237 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,237 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,237 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Sbol from the datatype registry for extension sbol. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,238 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,238 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,238 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Docx from the datatype registry for extension docx. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,238 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pptx from the datatype registry for extension pptx. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,238 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,238 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,239 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,239 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,239 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,239 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,239 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,239 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,240 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,240 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,240 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,240 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,240 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,240 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,241 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,241 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,241 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,241 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,241 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,241 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,242 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,242 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,242 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,242 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,242 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,242 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gaf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,243 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,243 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,243 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,243 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,243 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,243 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,243 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,244 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,244 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,244 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,244 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,244 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,245 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,245 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,245 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,245 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,245 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,245 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,246 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,246 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,246 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,246 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,246 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,246 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,247 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,247 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,247 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,247 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,247 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,247 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,248 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,248 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,248 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,248 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,248 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,248 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,249 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,249 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,249 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,249 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,249 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,249 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,250 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,250 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,250 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,250 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,250 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,250 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,251 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,251 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,251 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,251 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,251 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,251 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,252 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,253 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,253 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,253 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,253 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,253 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,255 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,255 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,255 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,256 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,256 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,256 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,256 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,256 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,256 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,257 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,258 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,258 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,258 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,258 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,258 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,258 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,259 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,259 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,260 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,260 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,260 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,260 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,261 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,261 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,261 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,261 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,261 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,261 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,262 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,262 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,262 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,262 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,262 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,262 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,263 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,263 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,263 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rrd. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,264 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Prm from the datatype registry for extension prm. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,264 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,264 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,264 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,264 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,264 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,265 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,269 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,270 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,270 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,270 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,270 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,270 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtpAscii from the datatype registry for extension vtpascii. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,270 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtpBinary from the datatype registry for extension vtpbinary. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,271 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,271 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,271 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,271 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SourmashSignature from the datatype registry for extension sourmash.sig. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,271 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,277 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,277 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,277 [pN:main,p:33472,tN:MainThread] Loaded preferred visualization definition: sdf -> molstar galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,277 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,277 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,277 [pN:main,p:33472,tN:MainThread] Loaded preferred visualization definition: mol -> molstar galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,278 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,278 [pN:main,p:33472,tN:MainThread] Loaded preferred visualization definition: mol2 -> molstar galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,278 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,278 [pN:main,p:33472,tN:MainThread] Loaded preferred visualization definition: cml -> molstar galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,278 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,278 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,279 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,279 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,279 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,279 [pN:main,p:33472,tN:MainThread] Loaded preferred visualization definition: pdb -> molstar galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,279 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,279 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,280 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,280 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,280 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,280 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,280 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Magres from the datatype registry for extension magres. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,280 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,281 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,281 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,281 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,281 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,281 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,281 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,282 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,282 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,282 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,282 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,282 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,282 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,283 [pN:main,p:33472,tN:MainThread] Loaded preferred visualization definition: gro -> molstar galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,283 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,283 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,283 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,283 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,283 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,284 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,284 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,284 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,284 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,284 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,284 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,285 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,285 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,285 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,285 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,285 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,285 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,286 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,286 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,286 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,286 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,286 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,287 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,287 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,287 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,287 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,287 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,287 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,288 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,288 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,288 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,288 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,288 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,288 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,289 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,289 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,289 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,289 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,289 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,290 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,290 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,291 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,291 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,291 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,293 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,293 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,294 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,294 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,294 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,294 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,294 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,295 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,295 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,295 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,295 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,296 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,296 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,296 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,297 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,297 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,297 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,297 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,297 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,297 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,298 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,298 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,298 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,298 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,298 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,299 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,300 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,300 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,300 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,300 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,300 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,301 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,301 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,301 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,301 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,304 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,304 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,305 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Ogg from the datatype registry for extension ogg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,305 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wma from the datatype registry for extension wma. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,305 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,305 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,305 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:M4a from the datatype registry for extension m4a. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,305 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,306 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flac from the datatype registry for extension flac. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,306 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Webm from the datatype registry for extension webm. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,306 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,306 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mov from the datatype registry for extension mov. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,306 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Avi from the datatype registry for extension avi. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,306 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wmv from the datatype registry for extension wmv. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,307 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,307 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,308 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,308 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,308 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,308 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,308 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,309 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,309 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,309 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,309 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,309 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,309 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,310 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,310 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,310 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,310 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,310 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,310 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,311 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,311 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,311 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkXml from the datatype registry for extension vtkxml. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,311 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GocadSGrid from the datatype registry for extension gocad.sg. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,311 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:FeflowFem from the datatype registry for extension feflow.fem. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,311 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:AsciiRaster from the datatype registry for extension raster.asc. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,312 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,312 [pN:main,p:33472,tN:MainThread] Overriding conflicting datatype with extension 'stl', using datatype from /private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/lib/galaxy/config/sample/datatypes_conf.xml.sample. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,312 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,312 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,312 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,312 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,313 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,313 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,313 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,313 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,313 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,313 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,314 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,314 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,315 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,315 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,315 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,315 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,316 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,316 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,316 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,316 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,317 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,317 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,317 [pN:main,p:33472,tN:MainThread] Loaded preferred visualization definition: fits -> aladin galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,318 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,319 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Net from the datatype registry for extension ucsc.net. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,319 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bcsp. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,319 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rd. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,319 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Safetensors from the datatype registry for extension safetensors. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,319 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension mlmodel. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,319 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension deacon.idx. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,320 [pN:main,p:33472,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension rmsx.json. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,320 [pN:main,p:33472,tN:MainThread] Loaded preferred visualization definition: rmsx.json -> rmsxflipbook galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,320 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,321 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,321 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,321 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,321 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,321 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,321 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,322 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,322 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,322 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,322 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,322 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,322 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,322 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,323 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,323 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,323 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,323 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtpAscii' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,323 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtpBinary' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,323 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkXml' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,324 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,324 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,324 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,324 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,324 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,324 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GocadSGrid' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,324 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:FeflowFem' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,325 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:AsciiRaster' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,325 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,325 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,325 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,325 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,325 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,326 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,326 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,326 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,326 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,326 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,326 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,327 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,327 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,327 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,327 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,327 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,327 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,327 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,328 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,328 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,328 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Hic' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,328 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,328 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,328 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,329 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,329 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,329 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,329 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,329 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,329 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,330 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,330 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,330 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,330 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,330 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,330 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,331 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,331 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,331 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,331 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,331 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,331 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,331 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,332 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,332 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,332 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,332 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,332 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,332 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,333 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,333 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveXz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,333 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,333 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,333 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pod5' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,333 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,334 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,334 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,334 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,334 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,334 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,334 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,335 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,335 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,335 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,335 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,335 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,335 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Docx' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,336 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pptx' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,336 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Numpy' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,336 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,336 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,336 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,336 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SpatialData' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,336 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedOMEZarrZipArchive' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,337 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZarrZipArchive' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,337 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,337 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,337 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,337 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,337 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,338 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Net' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,338 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,338 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,338 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,338 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,338 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,339 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,339 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,339 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,339 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,339 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,339 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,339 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,340 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,340 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,340 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,340 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,340 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,340 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,341 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,341 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,341 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,341 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,341 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,341 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,341 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,342 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,342 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,342 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,342 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,342 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,342 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,343 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,343 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,343 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,343 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,343 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,343 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,344 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,344 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,344 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,344 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,344 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Sbol' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,344 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,345 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,345 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,345 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,345 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,345 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,345 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,345 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,346 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,346 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,346 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,346 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,346 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,346 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,347 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,347 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,347 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,347 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,347 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Magres' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,347 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,348 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,348 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,348 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,348 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,348 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,348 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,349 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,349 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,349 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,349 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,349 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,349 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,350 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,350 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,350 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,350 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,350 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,350 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,351 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,351 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,351 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,351 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,351 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Taf' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,351 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,351 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:FourDNPairs' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,352 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:FourDNPairsam' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,352 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,352 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,352 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,352 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,352 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,353 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,353 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,353 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,353 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,353 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CytoscapeJson' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,353 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,354 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:VitessceJson' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,354 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,354 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,354 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,354 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,354 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,355 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,355 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,355 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,355 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,355 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,355 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,356 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:GeoCSV' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,356 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,356 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,356 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,356 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,356 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,357 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,357 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,357 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,357 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,357 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,357 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,357 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,358 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,358 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,358 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,358 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,358 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,358 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,359 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,359 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,359 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,359 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Dicom' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,359 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,359 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,360 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,360 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,360 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,360 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,360 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,360 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,361 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,361 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,361 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,361 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,361 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,361 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,362 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,362 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,362 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,362 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,362 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,362 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,363 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,363 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,363 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:M4a' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,363 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,363 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Ogg' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,363 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,364 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mov' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,364 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Avi' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,364 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wmv' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,364 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wma' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,364 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Webm' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,364 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,365 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,365 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,365 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,365 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,365 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,365 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,365 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,366 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,366 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,366 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,366 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,366 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,366 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,367 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,367 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,367 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,367 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,367 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,367 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,368 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,368 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,368 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,368 [pN:main,p:33472,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:SourmashSignature' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,370 [pN:main,p:33472,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,370 [pN:main,p:33472,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,371 [pN:main,p:33472,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,371 [pN:main,p:33472,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,371 [pN:main,p:33472,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,371 [pN:main,p:33472,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,371 [pN:main,p:33472,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,372 [pN:main,p:33472,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:37,372 [pN:main,p:33472,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample galaxy.util.tool_shed.tool_shed_registry DEBUG 2026-09-17 00:07:37,375 [pN:main,p:33472,tN:MainThread] Loading references to tool sheds from /private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/tool_sheds_conf.xml galaxy.util.tool_shed.tool_shed_registry DEBUG 2026-09-17 00:07:37,375 [pN:main,p:33472,tN:MainThread] Loaded reference to tool shed: toolshed.g2.bx.psu.edu galaxy.web_stack DEBUG 2026-09-17 00:07:37,407 [pN:main.1,p:33472,tN:MainThread] server_name set to: main.1 galaxy.agents.registry DEBUG 2026-09-17 00:07:37,407 [pN:main.1,p:33472,tN:MainThread] Registered agent: router -> QueryRouterAgent galaxy.agents.registry DEBUG 2026-09-17 00:07:37,408 [pN:main.1,p:33472,tN:MainThread] Registered agent: error_analysis -> ErrorAnalysisAgent galaxy.agents.registry DEBUG 2026-09-17 00:07:37,408 [pN:main.1,p:33472,tN:MainThread] Registered agent: custom_tool -> CustomToolAgent galaxy.agents.registry DEBUG 2026-09-17 00:07:37,408 [pN:main.1,p:33472,tN:MainThread] Registered agent: orchestrator -> WorkflowOrchestratorAgent galaxy.agents.registry DEBUG 2026-09-17 00:07:37,408 [pN:main.1,p:33472,tN:MainThread] Registered agent: tool_recommendation -> ToolRecommendationAgent galaxy.agents.registry DEBUG 2026-09-17 00:07:37,408 [pN:main.1,p:33472,tN:MainThread] Registered agent: history -> HistoryAgent galaxy.agents.registry DEBUG 2026-09-17 00:07:37,409 [pN:main.1,p:33472,tN:MainThread] Registered agent: gtn_training -> GTNTrainingAgent galaxy.agents.registry DEBUG 2026-09-17 00:07:37,409 [pN:main.1,p:33472,tN:MainThread] Registered agent: page_assistant -> PageAssistantAgent galaxy.visualization.genomes ERROR 2026-09-17 00:07:37,409 [pN:main.1,p:33472,tN:MainThread] Error reading twobit.loc Traceback (most recent call last): File "/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/lib/galaxy/visualization/genomes.py", line 225, in reload_genomes with open(twobit_path) as f: ^^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/tool-data/twobit.loc' galaxy.util WARNING 2026-09-17 00:07:37,435 [pN:main.1,p:33472,tN:MainThread] directory not found: /private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/config/plugins/activities galaxy.tools WARNING 2026-09-17 00:07:37,436 [pN:main.1,p:33472,tN:MainThread] The default shed tool config file (/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 00:07:37,436 [pN:main.1,p:33472,tN:MainThread] Parsing the tool configuration /private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2026-09-17 00:07:37,437 [pN:main.1,p:33472,tN:MainThread] Tool path for tool configuration /private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/tool_conf.xml is None galaxy.tools DEBUG 2026-09-17 00:07:37,438 [pN:main.1,p:33472,tN:MainThread] No parameter model for tool 'upload1': Cannot generate a tool parameter model for upload_dataset inputs galaxy.tool_util.toolbox.base DEBUG 2026-09-17 00:07:37,450 [pN:main.1,p:33472,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.parser.factory INFO 2026-09-17 00:07:37,450 [pN:main.1,p:33472,tN:MainThread] Loading tool from YAML - this is experimental - tool will not function in future. galaxy.tool_util.toolbox.base ERROR 2026-09-17 00:07:37,455 [pN:main.1,p:33472,tN:MainThread] Error reading tool from path: /Users/mvandenb/src/worktrees/foundry/brc-c-auris/.foundry-runs/auris-scf1/galaxy-workflow.gxwf.yml Traceback (most recent call last): File "/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/lib/galaxy/tool_util/toolbox/base.py", line 967, in _load_tool_tag_set tool = self.load_tool(concrete_path, use_cached=False) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/lib/galaxy/tool_util/toolbox/base.py", line 1222, in load_tool tool = self.create_tool( ^^^^^^^^^^^^^^^^^ File "/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/lib/galaxy/tools/__init__.py", line 619, in create_tool return self._create_tool_from_source(tool_source, config_file=config_file, **kwds) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/lib/galaxy/tools/__init__.py", line 634, in _create_tool_from_source return create_tool_from_source(self.app, tool_source, **kwds) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/lib/galaxy/tools/__init__.py", line 448, in create_tool_from_source tool = ToolClass(config_file, tool_source, app, **kwds) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/lib/galaxy/tools/__init__.py", line 1099, in __init__ raise e File "/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/lib/galaxy/tools/__init__.py", line 1096, in __init__ self.parse(tool_source, guid=guid, dynamic=dynamic) File "/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/lib/galaxy/tools/__init__.py", line 1329, in parse raise Exception(f"Missing tool 'id' for tool at '{tool_source}'") Exception: Missing tool 'id' for tool at 'YamlToolSource[/Users/mvandenb/src/worktrees/foundry/brc-c-auris/.foundry-runs/auris-scf1/galaxy-workflow.gxwf.yml]' galaxy.tool_util.toolbox.base DEBUG 2026-09-17 00:07:37,459 [pN:main.1,p:33472,tN:MainThread] Loaded tool id: __FILTER_FROM_FILE__, version: 1.0.0 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2026-09-17 00:07:37,461 [pN:main.1,p:33472,tN:MainThread] Loaded tool id: __SAMPLE_SHEET_TO_TABULAR__, version: 1.0.0 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2026-09-17 00:07:37,462 [pN:main.1,p:33472,tN:MainThread] Loaded tool id: __FLATTEN__, version: 1.0.0 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2026-09-17 00:07:37,469 [pN:main.1,p:33472,tN:MainThread] Loaded tool id: Filter1, version: 1.1.1 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2026-09-17 00:07:37,471 [pN:main.1,p:33472,tN:MainThread] Loaded tool id: Cut1, version: 1.0.2 into tool panel.. galaxy.tools WARNING 2026-09-17 00:07:37,473 [pN:main.1,p:33472,tN:MainThread] The default shed tool config file (/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 00:07:37,473 [pN:main.1,p:33472,tN:MainThread] Parsing the tool configuration /private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/shed_tools_conf.xml galaxy.tool_util.toolbox.base DEBUG 2026-09-17 00:07:37,473 [pN:main.1,p:33472,tN:MainThread] Tool path for shed tool configuration /private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/shed_tools_conf.xml is /private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/shed_tools galaxy.tools WARNING 2026-09-17 00:07:37,474 [pN:main.1,p:33472,tN:MainThread] The default shed tool config file (/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2026-09-17 00:07:37,474 [pN:main.1,p:33472,tN:MainThread] Parsing the tool configuration /private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/empty_tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2026-09-17 00:07:37,475 [pN:main.1,p:33472,tN:MainThread] Tool path for tool configuration /private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/empty_tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2026-09-17 00:07:37,475 [pN:main.1,p:33472,tN:MainThread] Reading tools from config files finished (38.947 ms) galaxy.tool_util.toolbox.base DEBUG 2026-09-17 00:07:37,475 [pN:main.1,p:33472,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2026-09-17 00:07:37,476 [pN:main.1,p:33472,tN:MainThread] Loading EDAM tool panel finished (0.646 ms) galaxy.tool_util.toolbox.base DEBUG 2026-09-17 00:07:37,476 [pN:main.1,p:33472,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2026-09-17 00:07:37,476 [pN:main.1,p:33472,tN:MainThread] Loading EDAM tool panel finished (0.547 ms) galaxy.tool_util.toolbox.integrated_panel DEBUG 2026-09-17 00:07:37,477 [pN:main.1,p:33472,tN:MainThread] Writing integrated tool panel config file to '/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/integrated_tool_panel_conf.xml' galaxy.tool_util.toolbox.base DEBUG 2026-09-17 00:07:37,477 [pN:main.1,p:33472,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2026-09-17 00:07:37,478 [pN:main.1,p:33472,tN:MainThread] Loading EDAM tool panel finished (0.581 ms) galaxy.tool_util.toolbox.base DEBUG 2026-09-17 00:07:37,478 [pN:main.1,p:33472,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2026-09-17 00:07:37,478 [pN:main.1,p:33472,tN:MainThread] Loading EDAM tool panel finished (0.543 ms) galaxy.tools.search WARNING 2026-09-17 00:07:39,218 [pN:main.1,p:33472,tN:MainThread] Index at '/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/database/tool_search_index/default' uses outdated schema, creating a new index galaxy.tools.search WARNING 2026-09-17 00:07:39,223 [pN:main.1,p:33472,tN:MainThread] Index at '/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/database/tool_search_index/my_panel' uses outdated schema, creating a new index galaxy.tools.search WARNING 2026-09-17 00:07:39,226 [pN:main.1,p:33472,tN:MainThread] Index at '/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/database/tool_search_index/ontology:edam_operations' uses outdated schema, creating a new index galaxy.tools.search WARNING 2026-09-17 00:07:39,229 [pN:main.1,p:33472,tN:MainThread] Index at '/private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp35hohvvy/galaxy-dev/database/tool_search_index/ontology:edam_topics' uses outdated schema, creating a new index galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,233 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,234 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. galaxy.datatypes.display_applications.application ERROR 2026-09-17 00:07:39,235 [pN:main.1,p:33472,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,236 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,237 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. galaxy.datatypes.display_applications.application ERROR 2026-09-17 00:07:39,237 [pN:main.1,p:33472,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,237 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,238 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'igb_cram' for datatype 'cram', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,238 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,239 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,239 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,239 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,240 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,240 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,241 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.display_applications.application ERROR 2026-09-17 00:07:39,242 [pN:main.1,p:33472,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,242 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. galaxy.datatypes.display_applications.application ERROR 2026-09-17 00:07:39,243 [pN:main.1,p:33472,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,244 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,244 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. galaxy.datatypes.display_applications.application ERROR 2026-09-17 00:07:39,245 [pN:main.1,p:33472,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,245 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,246 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,247 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,247 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,248 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. galaxy.datatypes.display_applications.application ERROR 2026-09-17 00:07:39,249 [pN:main.1,p:33472,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,249 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,249 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'avivator' for datatype 'tiff', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,250 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. galaxy.datatypes.display_applications.application ERROR 2026-09-17 00:07:39,250 [pN:main.1,p:33472,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,250 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. galaxy.datatypes.display_applications.application ERROR 2026-09-17 00:07:39,251 [pN:main.1,p:33472,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,251 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,251 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,252 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'minerva_tabular' for datatype 'tabular', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,252 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.display_applications.application ERROR 2026-09-17 00:07:39,253 [pN:main.1,p:33472,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,253 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,254 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. galaxy.datatypes.display_applications.application ERROR 2026-09-17 00:07:39,254 [pN:main.1,p:33472,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,255 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,255 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. galaxy.datatypes.display_applications.application ERROR 2026-09-17 00:07:39,256 [pN:main.1,p:33472,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,256 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. galaxy.datatypes.display_applications.application ERROR 2026-09-17 00:07:39,257 [pN:main.1,p:33472,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,257 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. galaxy.datatypes.display_applications.application ERROR 2026-09-17 00:07:39,257 [pN:main.1,p:33472,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,258 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. galaxy.datatypes.display_applications.application ERROR 2026-09-17 00:07:39,258 [pN:main.1,p:33472,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,258 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. galaxy.datatypes.display_applications.application ERROR 2026-09-17 00:07:39,259 [pN:main.1,p:33472,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,259 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. galaxy.datatypes.display_applications.application ERROR 2026-09-17 00:07:39,259 [pN:main.1,p:33472,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,260 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,260 [pN:main.1,p:33472,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,260 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'a2m' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,261 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,261 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,261 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,261 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,261 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,261 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,262 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,262 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,262 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,262 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,262 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,262 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,262 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,263 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,263 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,263 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,263 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,263 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,263 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,264 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,264 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,264 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,264 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,264 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,264 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,265 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,265 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,265 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,265 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,265 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.bz2' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,265 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'a3m' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,266 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,266 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,266 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,266 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,266 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,266 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,267 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,267 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,267 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,267 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,268 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,268 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,268 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,268 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,268 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,269 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,269 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,269 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,269 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,269 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,270 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,270 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,270 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,270 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,270 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,270 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,271 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,271 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,271 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,271 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,271 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,272 [pN:main.1,p:33472,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,274 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,276 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,277 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,278 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,279 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,279 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,280 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,281 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,282 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,283 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,284 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,285 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,286 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,287 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,288 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,289 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,290 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,291 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,291 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,293 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,294 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,295 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,296 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,297 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,297 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,298 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,300 [pN:main.1,p:33472,tN:MainThread] Loaded converter: ucsc_bigbedtobed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,302 [pN:main.1,p:33472,tN:MainThread] Loaded converter: bigwigtowig galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,303 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,305 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,306 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,307 [pN:main.1,p:33472,tN:MainThread] Loaded converter: csv_to_tabular galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,308 [pN:main.1,p:33472,tN:MainThread] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,309 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,310 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,311 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,311 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,312 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,313 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,314 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,315 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,316 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,316 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,317 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,318 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,319 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,320 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,321 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,322 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,322 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,323 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,324 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,325 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,326 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,326 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,327 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,328 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,329 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,329 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,330 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,331 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,332 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,333 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,333 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,334 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,335 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,336 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,337 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,339 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,339 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,340 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,341 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,342 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,343 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,344 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,344 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,345 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,346 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,347 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,348 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,349 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,350 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,351 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,352 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_archive_to_directory galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,353 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_archive_to_directory galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,354 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_archive_to_directory galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,356 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_archive_to_directory galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,356 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,357 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,358 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,359 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,360 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,361 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,362 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,363 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,364 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,365 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,365 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,366 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,367 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,368 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,369 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,370 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,371 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,372 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,373 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,374 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,375 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,376 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,377 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,378 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,379 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,380 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,381 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,381 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,382 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,383 [pN:main.1,p:33472,tN:MainThread] Loaded converter: tabular_to_dbnsfp galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,384 [pN:main.1,p:33472,tN:MainThread] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,385 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,386 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,387 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,388 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,389 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,390 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,391 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,392 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,393 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,393 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,394 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,395 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,396 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,397 [pN:main.1,p:33472,tN:MainThread] Loaded converter: lped2fpedconvert galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,398 [pN:main.1,p:33472,tN:MainThread] Loaded converter: lped2pbedconvert galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,399 [pN:main.1,p:33472,tN:MainThread] Loaded converter: pbed2lpedconvert galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,399 [pN:main.1,p:33472,tN:MainThread] Loaded converter: pbed2ldindepconvert galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,400 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,401 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,402 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,403 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,407 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,410 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,413 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,414 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,417 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,419 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,422 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,425 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,429 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,432 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,435 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,438 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,439 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,443 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,446 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,449 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,453 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,456 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,459 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,463 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,466 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,469 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,473 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,474 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,477 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,478 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,481 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,485 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,488 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,489 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,490 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,492 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,493 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,494 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,495 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,497 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,498 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,499 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,499 [pN:main.1,p:33472,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore galaxy.datatypes.registry DEBUG 2026-09-17 00:07:39,502 [pN:main.1,p:33472,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ galaxy.tools.special_tools DEBUG 2026-09-17 00:07:39,504 [pN:main.1,p:33472,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2026-09-17 00:07:39,505 [pN:main.1,p:33472,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ galaxy.tools.special_tools DEBUG 2026-09-17 00:07:39,506 [pN:main.1,p:33472,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ galaxy.tools DEBUG 2026-09-17 00:07:39,506 [pN:main.1,p:33472,tN:MainThread] No parameter model for tool '__DATA_FETCH__': Cannot generate a tool parameter model for upload_dataset inputs galaxy.tools.special_tools DEBUG 2026-09-17 00:07:39,507 [pN:main.1,p:33472,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ galaxy.visualization.plugins.registry INFO 2026-09-17 00:07:39,508 [pN:main.1,p:33472,tN:MainThread] VisualizationsRegistry, loaded plugin: example galaxy.tours._impl INFO 2026-09-17 00:07:39,514 [pN:main.1,p:33472,tN:MainThread] Loaded tour 'core.galaxy_ui' galaxy.tours._impl INFO 2026-09-17 00:07:39,519 [pN:main.1,p:33472,tN:MainThread] Loaded tour 'core.deferred' galaxy.tours._impl INFO 2026-09-17 00:07:39,523 [pN:main.1,p:33472,tN:MainThread] Loaded tour 'core.windows' galaxy.tours._impl INFO 2026-09-17 00:07:39,525 [pN:main.1,p:33472,tN:MainThread] Loaded tour 'core.visualizations' galaxy.tours._impl INFO 2026-09-17 00:07:39,529 [pN:main.1,p:33472,tN:MainThread] Loaded tour 'core.history' galaxy.workflow.scheduling_manager INFO 2026-09-17 00:07:39,543 [pN:main.1,p:33472,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. galaxy.web_stack.handlers INFO 2026-09-17 00:07:39,544 [pN:main.1,p:33472,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_TRANSACTION_ISOLATION', set the `assign_with` attribute on to override the default galaxy.workflow.scheduling_manager DEBUG 2026-09-17 00:07:39,544 [pN:main.1,p:33472,tN:MainThread] Starting workflow schedulers galaxy.jobs.handler INFO 2026-09-17 00:07:39,547 [pN:main.1,p:33472,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_TRANSACTION_ISOLATION' assignment method for handler 'main.1', tag(s): _default_, None galaxy.workflow.completion_hooks INFO 2026-09-17 00:07:39,552 [pN:main.1,p:33472,tN:MainThread] Enabling workflow completion hook: send_notification galaxy.workflow.completion_hooks INFO 2026-09-17 00:07:39,552 [pN:main.1,p:33472,tN:MainThread] Enabling workflow completion hook: export_to_file_source galaxy.workflow.completion_monitor INFO 2026-09-17 00:07:39,553 [pN:main.1,p:33472,tN:MainThread] Starting workflow completion monitor galaxy.jobs.manager DEBUG 2026-09-17 00:07:39,554 [pN:main.1,p:33472,tN:MainThread] Initializing job handler galaxy.jobs INFO 2026-09-17 00:07:39,554 [pN:main.1,p:33472,tN:MainThread] Handler 'main.1' will load all configured runner plugins galaxy.jobs.runners.state_handler_factory DEBUG 2026-09-17 00:07:39,560 [pN:main.1,p:33472,tN:MainThread] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit galaxy.jobs DEBUG 2026-09-17 00:07:39,560 [pN:main.1,p:33472,tN:MainThread] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' galaxy.jobs.handler DEBUG 2026-09-17 00:07:39,560 [pN:main.1,p:33472,tN:MainThread] Loaded job runners plugins: local galaxy.jobs.runners DEBUG 2026-09-17 00:07:39,560 [pN:main.1,p:33472,tN:MainThread] Starting 1 LocalRunner workers galaxy.jobs.handler DEBUG 2026-09-17 00:07:39,561 [pN:main.1,p:33472,tN:MainThread] Handler queue starting for jobs assigned to handler: main.1 galaxy.jobs.handler INFO 2026-09-17 00:07:39,565 [pN:main.1,p:33472,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_TRANSACTION_ISOLATION' assignment method for handler 'main.1', tag(s): galaxy.jobs.handler INFO 2026-09-17 00:07:39,565 [pN:main.1,p:33472,tN:MainThread] job handler queue started galaxy.jobs.handler INFO 2026-09-17 00:07:39,566 [pN:main.1,p:33472,tN:MainThread] job handler stop queue started galaxy.queue_worker INFO 2026-09-17 00:07:39,568 [pN:main.1,p:33472,tN:MainThread] Binding and starting galaxy control worker for main.1 galaxy.queue_worker INFO 2026-09-17 00:07:39,569 [pN:main.1,p:33472,tN:MainThread] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.model.database_heartbeat DEBUG 2026-09-17 00:07:39,589 [pN:main.1,p:33472,tN:database_heartbeart_main.1.thread] main.1 is config watcher galaxy.model.database_heartbeat DEBUG 2026-09-17 00:07:39,590 [pN:main.1,p:33472,tN:database_heartbeart_main.1.thread] main.1 is history audit monitor galaxy.app INFO 2026-09-17 00:07:39,591 [pN:main.1,p:33472,tN:MainThread] Galaxy app startup finished (4590.653 ms) galaxy.web.framework.base DEBUG 2026-09-17 00:07:39,595 [pN:main.1,p:33472,tN:MainThread] Enabling 'user' controller, class: User galaxy.web.framework.base DEBUG 2026-09-17 00:07:39,600 [pN:main.1,p:33472,tN:MainThread] Enabling 'page' controller, class: PageController galaxy.web.framework.base DEBUG 2026-09-17 00:07:39,601 [pN:main.1,p:33472,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController galaxy.web.framework.base DEBUG 2026-09-17 00:07:39,622 [pN:main.1,p:33472,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface galaxy.web.framework.base DEBUG 2026-09-17 00:07:39,625 [pN:main.1,p:33472,tN:MainThread] Enabling 'forms' controller, class: Forms galaxy.web.framework.base DEBUG 2026-09-17 00:07:39,636 [pN:main.1,p:33472,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy galaxy.web.framework.base DEBUG 2026-09-17 00:07:39,637 [pN:main.1,p:33472,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic galaxy.web.framework.base DEBUG 2026-09-17 00:07:39,638 [pN:main.1,p:33472,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner galaxy.web.framework.base DEBUG 2026-09-17 00:07:39,644 [pN:main.1,p:33472,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy galaxy.web.framework.base DEBUG 2026-09-17 00:07:39,645 [pN:main.1,p:33472,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed galaxy.web.framework.base DEBUG 2026-09-17 00:07:39,646 [pN:main.1,p:33472,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController galaxy.web.framework.base DEBUG 2026-09-17 00:07:39,647 [pN:main.1,p:33472,tN:MainThread] Enabling 'async' controller, class: ASync galaxy.web.framework.base DEBUG 2026-09-17 00:07:39,648 [pN:main.1,p:33472,tN:MainThread] Enabling 'data_manager' controller, class: DataManager galaxy.web.framework.base DEBUG 2026-09-17 00:07:39,651 [pN:main.1,p:33472,tN:MainThread] Enabling 'root' controller, class: RootController galaxy.web.framework.base DEBUG 2026-09-17 00:07:39,651 [pN:main.1,p:33472,tN:MainThread] Enabling 'authnz' controller, class: OIDC galaxy.web.framework.base DEBUG 2026-09-17 00:07:39,670 [pN:main.1,p:33472,tN:MainThread] Enabling 'history' controller, class: HistoryController galaxy.web.framework.base DEBUG 2026-09-17 00:07:39,817 [pN:main.1,p:33472,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController galaxy.web.framework.base DEBUG 2026-09-17 00:07:40,248 [pN:main.1,p:33472,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController galaxy.web.framework.base DEBUG 2026-09-17 00:07:40,407 [pN:main.1,p:33472,tN:MainThread] Enabling 'users' API controller, class: UserAPIController galaxy.web.framework.base DEBUG 2026-09-17 00:07:40,409 [pN:main.1,p:33472,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController galaxy.queue_worker INFO 2026-09-17 00:07:40,611 [pN:main.1,p:33472,tN:Thread-2] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. galaxy.tools.search DEBUG 2026-09-17 00:07:40,611 [pN:main.1,p:33472,tN:Thread-2] Starting to build toolbox index of panel default. galaxy.web.framework.base DEBUG 2026-09-17 00:07:40,639 [pN:main.1,p:33472,tN:MainThread] Enabling 'tools' API controller, class: ToolsController galaxy.web.framework.base DEBUG 2026-09-17 00:07:40,645 [pN:main.1,p:33472,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController galaxy.web.framework.base DEBUG 2026-09-17 00:07:41,220 [pN:main.1,p:33472,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController galaxy.web.framework.base DEBUG 2026-09-17 00:07:41,508 [pN:main.1,p:33472,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController galaxy.web.framework.base DEBUG 2026-09-17 00:07:41,696 [pN:main.1,p:33472,tN:MainThread] Enabling 'jobs' API controller, class: JobController galaxy.web.framework.base DEBUG 2026-09-17 00:07:41,703 [pN:main.1,p:33472,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController galaxy.web.framework.base DEBUG 2026-09-17 00:07:41,705 [pN:main.1,p:33472,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController galaxy.tools.search DEBUG 2026-09-17 00:07:42,175 [pN:main.1,p:33472,tN:Thread-2] Toolbox index of panel default finished (1562.961 ms) galaxy.tools.search DEBUG 2026-09-17 00:07:42,175 [pN:main.1,p:33472,tN:Thread-2] Starting to build toolbox index of panel my_panel. galaxy.tools.search DEBUG 2026-09-17 00:07:42,237 [pN:main.1,p:33472,tN:Thread-2] Toolbox index of panel my_panel finished (61.528 ms) galaxy.tools.search DEBUG 2026-09-17 00:07:42,237 [pN:main.1,p:33472,tN:Thread-2] Starting to build toolbox index of panel ontology:edam_operations. galaxy.web.framework.base DEBUG 2026-09-17 00:07:42,238 [pN:main.1,p:33472,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController galaxy.web.framework.base DEBUG 2026-09-17 00:07:42,269 [pN:main.1,p:33472,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController galaxy.web.framework.base DEBUG 2026-09-17 00:07:42,269 [pN:main.1,p:33472,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController galaxy.web.framework.base DEBUG 2026-09-17 00:07:42,270 [pN:main.1,p:33472,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController galaxy.web.framework.base DEBUG 2026-09-17 00:07:42,791 [pN:main.1,p:33472,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController galaxy.web.framework.base DEBUG 2026-09-17 00:07:42,915 [pN:main.1,p:33472,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController galaxy.web.framework.base DEBUG 2026-09-17 00:07:42,917 [pN:main.1,p:33472,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController galaxy.web.framework.base DEBUG 2026-09-17 00:07:42,922 [pN:main.1,p:33472,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController galaxy.web.framework.base DEBUG 2026-09-17 00:07:42,937 [pN:main.1,p:33472,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController galaxy.web.framework.base DEBUG 2026-09-17 00:07:42,938 [pN:main.1,p:33472,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController galaxy.web.framework.base DEBUG 2026-09-17 00:07:42,938 [pN:main.1,p:33472,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController galaxy.tools.search DEBUG 2026-09-17 00:07:42,939 [pN:main.1,p:33472,tN:Thread-2] Toolbox index of panel ontology:edam_operations finished (701.346 ms) galaxy.web.framework.base DEBUG 2026-09-17 00:07:42,939 [pN:main.1,p:33472,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController galaxy.tools.search DEBUG 2026-09-17 00:07:42,939 [pN:main.1,p:33472,tN:Thread-2] Starting to build toolbox index of panel ontology:edam_topics. galaxy.web.framework.base DEBUG 2026-09-17 00:07:43,172 [pN:main.1,p:33472,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController galaxy.web.framework.base DEBUG 2026-09-17 00:07:43,187 [pN:main.1,p:33472,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController galaxy.web.framework.base DEBUG 2026-09-17 00:07:43,187 [pN:main.1,p:33472,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController galaxy.web.framework.base DEBUG 2026-09-17 00:07:43,187 [pN:main.1,p:33472,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController galaxy.webapps.util DEBUG 2026-09-17 00:07:44,103 [pN:main.1,p:33472,tN:MainThread] Enabling 'paste.httpexceptions' middleware galaxy.webapps.util DEBUG 2026-09-17 00:07:44,105 [pN:main.1,p:33472,tN:MainThread] Enabling 'RemoteUser' middleware galaxy.webapps.util DEBUG 2026-09-17 00:07:44,105 [pN:main.1,p:33472,tN:MainThread] Enabling 'ErrorMiddleware' middleware galaxy.webapps.util DEBUG 2026-09-17 00:07:44,106 [pN:main.1,p:33472,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware galaxy.webapps.util DEBUG 2026-09-17 00:07:44,106 [pN:main.1,p:33472,tN:MainThread] Enabling 'RequestIDMiddleware' middleware galaxy.webapps.util DEBUG 2026-09-17 00:07:44,106 [pN:main.1,p:33472,tN:MainThread] Enabling 'build_url_map' middleware galaxy.web_stack INFO 2026-09-17 00:07:44,107 [pN:main.1,p:33472,tN:MainThread] Galaxy server instance 'main.1' is running Serving on http://127.0.0.1:55770 galaxy.webapps.galaxy.buildapp DEBUG 2026-09-17 00:07:44,107 [pN:main.1,p:33472,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 8427134336)> is alive. galaxy.webapps.galaxy.buildapp DEBUG 2026-09-17 00:07:44,108 [pN:main.1,p:33472,tN:MainThread] Prior to webapp return, Galaxy thread is alive. galaxy.webapps.galaxy.buildapp DEBUG 2026-09-17 00:07:44,108 [pN:main.1,p:33472,tN:MainThread] Prior to webapp return, Galaxy thread is alive. galaxy.webapps.galaxy.buildapp DEBUG 2026-09-17 00:07:44,108 [pN:main.1,p:33472,tN:MainThread] Prior to webapp return, Galaxy thread is alive. galaxy.webapps.galaxy.buildapp DEBUG 2026-09-17 00:07:44,108 [pN:main.1,p:33472,tN:MainThread] Prior to webapp return, Galaxy thread is alive. galaxy.webapps.galaxy.buildapp DEBUG 2026-09-17 00:07:44,109 [pN:main.1,p:33472,tN:MainThread] Prior to webapp return, Galaxy thread is alive. galaxy.webapps.galaxy.buildapp DEBUG 2026-09-17 00:07:44,109 [pN:main.1,p:33472,tN:MainThread] Prior to webapp return, Galaxy thread is alive. galaxy.webapps.galaxy.buildapp DEBUG 2026-09-17 00:07:44,109 [pN:main.1,p:33472,tN:MainThread] Prior to webapp return, Galaxy thread is alive. galaxy.webapps.galaxy.buildapp DEBUG 2026-09-17 00:07:44,109 [pN:main.1,p:33472,tN:MainThread] Prior to webapp return, Galaxy thread is alive. galaxy.webapps.galaxy.buildapp DEBUG 2026-09-17 00:07:44,109 [pN:main.1,p:33472,tN:MainThread] Prior to webapp return, Galaxy thread is alive. galaxy.webapps.galaxy.buildapp DEBUG 2026-09-17 00:07:44,110 [pN:main.1,p:33472,tN:MainThread] Prior to webapp return, Galaxy thread is alive. galaxy.tools.search DEBUG 2026-09-17 00:07:44,903 [pN:main.1,p:33472,tN:Thread-2] Toolbox index of panel ontology:edam_topics finished (1963.126 ms) galaxy.tools INFO 2026-09-17 00:07:48,596 [pN:main.1,p:33472,tN:AnyIO worker thread] Validated and populated state for tool request (0.270 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:07:48,597 [pN:main.1,p:33472,tN:AnyIO worker thread] Persisted uploads (0.005 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:07:48,613 [pN:main.1,p:33472,tN:AnyIO worker thread] Created upload job (0.671 ms) galaxy.tools.execute DEBUG 2026-09-17 00:07:48,614 [pN:main.1,p:33472,tN:AnyIO worker thread] Tool __DATA_FETCH__ created job None (16.310 ms) galaxy.tools.execute DEBUG 2026-09-17 00:07:48,648 [pN:main.1,p:33472,tN:AnyIO worker thread] Created 1 job(s) for tool __DATA_FETCH__ request (52.381 ms) galaxy.tools INFO 2026-09-17 00:07:57,861 [pN:main.1,p:33472,tN:AnyIO worker thread] Validated and populated state for tool request (0.316 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:07:57,862 [pN:main.1,p:33472,tN:AnyIO worker thread] Persisted uploads (0.003 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:07:57,873 [pN:main.1,p:33472,tN:AnyIO worker thread] Created upload job (0.697 ms) galaxy.tools.execute DEBUG 2026-09-17 00:07:57,874 [pN:main.1,p:33472,tN:AnyIO worker thread] Tool __DATA_FETCH__ created job None (11.825 ms) galaxy.tools.execute DEBUG 2026-09-17 00:07:57,881 [pN:main.1,p:33472,tN:AnyIO worker thread] Created 1 job(s) for tool __DATA_FETCH__ request (20.182 ms) galaxy.tools INFO 2026-09-17 00:08:02,822 [pN:main.1,p:33472,tN:AnyIO worker thread] Validated and populated state for tool request (0.252 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:02,823 [pN:main.1,p:33472,tN:AnyIO worker thread] Persisted uploads (0.002 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:02,833 [pN:main.1,p:33472,tN:AnyIO worker thread] Created upload job (0.611 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:02,833 [pN:main.1,p:33472,tN:AnyIO worker thread] Tool __DATA_FETCH__ created job None (9.722 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:02,839 [pN:main.1,p:33472,tN:AnyIO worker thread] Created 1 job(s) for tool __DATA_FETCH__ request (16.775 ms) galaxy.tools INFO 2026-09-17 00:08:07,102 [pN:main.1,p:33472,tN:AnyIO worker thread] Validated and populated state for tool request (0.407 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:07,104 [pN:main.1,p:33472,tN:AnyIO worker thread] Persisted uploads (0.004 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:07,117 [pN:main.1,p:33472,tN:AnyIO worker thread] Created upload job (0.793 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:07,117 [pN:main.1,p:33472,tN:AnyIO worker thread] Tool __DATA_FETCH__ created job None (13.759 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:07,126 [pN:main.1,p:33472,tN:AnyIO worker thread] Created 1 job(s) for tool __DATA_FETCH__ request (22.899 ms) galaxy.tools INFO 2026-09-17 00:08:11,096 [pN:main.1,p:33472,tN:AnyIO worker thread] Validated and populated state for tool request (0.289 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:11,097 [pN:main.1,p:33472,tN:AnyIO worker thread] Persisted uploads (0.002 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:11,107 [pN:main.1,p:33472,tN:AnyIO worker thread] Created upload job (0.690 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:11,107 [pN:main.1,p:33472,tN:AnyIO worker thread] Tool __DATA_FETCH__ created job None (10.330 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:11,117 [pN:main.1,p:33472,tN:AnyIO worker thread] Created 1 job(s) for tool __DATA_FETCH__ request (20.638 ms) galaxy.tools INFO 2026-09-17 00:08:15,129 [pN:main.1,p:33472,tN:AnyIO worker thread] Validated and populated state for tool request (0.238 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:15,130 [pN:main.1,p:33472,tN:AnyIO worker thread] Persisted uploads (0.002 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:15,140 [pN:main.1,p:33472,tN:AnyIO worker thread] Created upload job (0.651 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:15,141 [pN:main.1,p:33472,tN:AnyIO worker thread] Tool __DATA_FETCH__ created job None (10.411 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:15,148 [pN:main.1,p:33472,tN:AnyIO worker thread] Created 1 job(s) for tool __DATA_FETCH__ request (17.750 ms) galaxy.tools INFO 2026-09-17 00:08:19,204 [pN:main.1,p:33472,tN:AnyIO worker thread] Validated and populated state for tool request (0.241 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:19,205 [pN:main.1,p:33472,tN:AnyIO worker thread] Persisted uploads (0.002 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:19,214 [pN:main.1,p:33472,tN:AnyIO worker thread] Created upload job (0.651 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:19,215 [pN:main.1,p:33472,tN:AnyIO worker thread] Tool __DATA_FETCH__ created job None (10.099 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:19,222 [pN:main.1,p:33472,tN:AnyIO worker thread] Created 1 job(s) for tool __DATA_FETCH__ request (17.528 ms) galaxy.tools INFO 2026-09-17 00:08:23,402 [pN:main.1,p:33472,tN:AnyIO worker thread] Validated and populated state for tool request (0.444 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:23,404 [pN:main.1,p:33472,tN:AnyIO worker thread] Persisted uploads (0.002 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:23,416 [pN:main.1,p:33472,tN:AnyIO worker thread] Created upload job (0.712 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:23,416 [pN:main.1,p:33472,tN:AnyIO worker thread] Tool __DATA_FETCH__ created job None (12.731 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:23,428 [pN:main.1,p:33472,tN:AnyIO worker thread] Created 1 job(s) for tool __DATA_FETCH__ request (24.937 ms) galaxy.tools INFO 2026-09-17 00:08:27,204 [pN:main.1,p:33472,tN:AnyIO worker thread] Validated and populated state for tool request (0.280 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:27,205 [pN:main.1,p:33472,tN:AnyIO worker thread] Persisted uploads (0.002 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:27,215 [pN:main.1,p:33472,tN:AnyIO worker thread] Created upload job (0.733 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:27,215 [pN:main.1,p:33472,tN:AnyIO worker thread] Tool __DATA_FETCH__ created job None (10.769 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:27,223 [pN:main.1,p:33472,tN:AnyIO worker thread] Created 1 job(s) for tool __DATA_FETCH__ request (19.137 ms) galaxy.tools INFO 2026-09-17 00:08:31,242 [pN:main.1,p:33472,tN:AnyIO worker thread] Validated and populated state for tool request (0.242 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:31,243 [pN:main.1,p:33472,tN:AnyIO worker thread] Persisted uploads (0.001 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:31,252 [pN:main.1,p:33472,tN:AnyIO worker thread] Created upload job (0.652 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:31,252 [pN:main.1,p:33472,tN:AnyIO worker thread] Tool __DATA_FETCH__ created job None (9.633 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:31,259 [pN:main.1,p:33472,tN:AnyIO worker thread] Created 1 job(s) for tool __DATA_FETCH__ request (17.098 ms) galaxy.tools INFO 2026-09-17 00:08:35,382 [pN:main.1,p:33472,tN:AnyIO worker thread] Validated and populated state for tool request (0.292 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:35,383 [pN:main.1,p:33472,tN:AnyIO worker thread] Persisted uploads (0.002 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:35,392 [pN:main.1,p:33472,tN:AnyIO worker thread] Created upload job (0.590 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:35,392 [pN:main.1,p:33472,tN:AnyIO worker thread] Tool __DATA_FETCH__ created job None (9.741 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:35,399 [pN:main.1,p:33472,tN:AnyIO worker thread] Created 1 job(s) for tool __DATA_FETCH__ request (17.131 ms) galaxy.tools INFO 2026-09-17 00:08:39,638 [pN:main.1,p:33472,tN:AnyIO worker thread] Validated and populated state for tool request (0.345 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:39,639 [pN:main.1,p:33472,tN:AnyIO worker thread] Persisted uploads (0.002 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:39,653 [pN:main.1,p:33472,tN:AnyIO worker thread] Created upload job (0.920 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:39,653 [pN:main.1,p:33472,tN:AnyIO worker thread] Tool __DATA_FETCH__ created job None (14.029 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:39,662 [pN:main.1,p:33472,tN:AnyIO worker thread] Created 1 job(s) for tool __DATA_FETCH__ request (23.813 ms) galaxy.managers.collections_util DEBUG 2026-09-17 00:08:43,655 [pN:main.1,p:33472,tN:AnyIO worker thread] Validating 6 element identifiers for collection creation. galaxy.managers.collections_util DEBUG 2026-09-17 00:08:43,656 [pN:main.1,p:33472,tN:AnyIO worker thread] Validating 2 element identifiers for collection creation. galaxy.managers.collections_util DEBUG 2026-09-17 00:08:43,656 [pN:main.1,p:33472,tN:AnyIO worker thread] Validating 2 element identifiers for collection creation. galaxy.managers.collections_util DEBUG 2026-09-17 00:08:43,656 [pN:main.1,p:33472,tN:AnyIO worker thread] Validating 2 element identifiers for collection creation. galaxy.managers.collections_util DEBUG 2026-09-17 00:08:43,656 [pN:main.1,p:33472,tN:AnyIO worker thread] Validating 2 element identifiers for collection creation. galaxy.managers.collections_util DEBUG 2026-09-17 00:08:43,657 [pN:main.1,p:33472,tN:AnyIO worker thread] Validating 2 element identifiers for collection creation. galaxy.managers.collections_util DEBUG 2026-09-17 00:08:43,657 [pN:main.1,p:33472,tN:AnyIO worker thread] Validating 2 element identifiers for collection creation. galaxy.managers.collections DEBUG 2026-09-17 00:08:43,664 [pN:main.1,p:33472,tN:AnyIO worker thread] Created collection with 6 elements galaxy.files.uris DEBUG 2026-09-17 00:08:43,705 [pN:main.1,p:33472,tN:AnyIO worker thread] parsed url ftp.ncbi.nlm.nih.gov, port: None galaxy.tools INFO 2026-09-17 00:08:43,709 [pN:main.1,p:33472,tN:AnyIO worker thread] Validated and populated state for tool request (0.227 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:43,710 [pN:main.1,p:33472,tN:AnyIO worker thread] Persisted uploads (0.002 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:43,719 [pN:main.1,p:33472,tN:AnyIO worker thread] Created upload job (0.586 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:43,719 [pN:main.1,p:33472,tN:AnyIO worker thread] Tool __DATA_FETCH__ created job None (8.913 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:43,726 [pN:main.1,p:33472,tN:AnyIO worker thread] Created 1 job(s) for tool __DATA_FETCH__ request (16.140 ms) galaxy.files.uris DEBUG 2026-09-17 00:08:48,835 [pN:main.1,p:33472,tN:AnyIO worker thread] parsed url ftp.ncbi.nlm.nih.gov, port: None galaxy.tools INFO 2026-09-17 00:08:48,840 [pN:main.1,p:33472,tN:AnyIO worker thread] Validated and populated state for tool request (0.438 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:48,841 [pN:main.1,p:33472,tN:AnyIO worker thread] Persisted uploads (0.004 ms) galaxy.tools.actions.upload DEBUG 2026-09-17 00:08:48,856 [pN:main.1,p:33472,tN:AnyIO worker thread] Created upload job (0.839 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:48,857 [pN:main.1,p:33472,tN:AnyIO worker thread] Tool __DATA_FETCH__ created job None (15.498 ms) galaxy.tools.execute DEBUG 2026-09-17 00:08:48,865 [pN:main.1,p:33472,tN:AnyIO worker thread] Created 1 job(s) for tool __DATA_FETCH__ request (25.158 ms) Failed to execute Galaxy activity, throwing ErrorRunResponse Shut down supervisord has terminated There were problems with 1 test(s) - out of 1 test(s) executed. See /Users/mvandenb/src/worktrees/foundry/brc-c-auris/.foundry-runs/auris-scf1/planemo-smoke.html for detailed breakdown. Traceback (most recent call last): File "/Users/mvandenb/.local/share/uv/tools/planemo/lib/python3.13/site-packages/planemo/galaxy/activity.py", line 89, in execute return _execute(ctx, config, runnable, job_path, fail_fast=fail_fast, **kwds) File "/Users/mvandenb/.local/share/uv/tools/planemo/lib/python3.13/site-packages/planemo/galaxy/activity.py", line 313, in _execute invocation = user_gi.workflows.invoke_workflow( workflow_id, ...<3 lines>... inputs_by="name", ) File "/Users/mvandenb/.local/share/uv/tools/planemo/lib/python3.13/site-packages/bioblend/galaxy/workflows/__init__.py", line 593, in invoke_workflow return self._post(payload, url=url) ~~~~~~~~~~^^^^^^^^^^^^^^^^^^ File "/Users/mvandenb/.local/share/uv/tools/planemo/lib/python3.13/site-packages/bioblend/galaxy/client.py", line 196, in _post return self.gi.make_post_request(url, payload=payload, files_attached=files_attached) ~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/mvandenb/.local/share/uv/tools/planemo/lib/python3.13/site-packages/bioblend/galaxyclient.py", line 206, in make_post_request raise ConnectionError( ...<3 lines>... ) bioblend.ConnectionError: Unexpected HTTP status code: 400: {"err_msg":"Workflow was not invoked; the following required tools are not installed: toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt (version 5.2+galaxy2), toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param (version 0.1.1), toolshed.g2.bx.psu.edu/repos/iuc/map_param_value/map_param_value (version 0.2.0), toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc (version 0.74+galaxy1), toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star (version 2.7.11b+galaxy1), toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts (version 2.1.1+galaxy1), toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2 (version 2.11.40.8+galaxy4)","err_code":0} galaxy-workflow.gxwf.yml_1: failed === PLANEMO_EXIT=1 2026-09-16T22:09:02Z ===