{
  "command": "gxwf validate ebola-test/galaxy-workflow.gxwf.yml",
  "workflow_path": "ebola-test/galaxy-workflow.gxwf.yml",
  "status": "pass",
  "diagnostics": [],
  "tool_state": {
    "validated": 2,
    "skipped": 0
  },
  "residual_runtime_risks": [
    {
      "risk": "Salmon mapping rate on real vs toy transcriptome",
      "description": "If the transcriptome fasta does not match read headers/chromosomes, quantification will be zero or very low.",
      "runtime_artifact": "salmon_quant_collection quant.sf"
    },
    {
      "risk": "DESeq2 sample table factor alignment",
      "description": "Column names in sample_metadata must exactly match factor names in the custom design formula (~ Genotype + Timepoint + Condition).",
      "runtime_artifact": "deseq2_plots, deseq2_differential_results"
    }
  ]
}