Your Project Here

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Project Theme

Choose one of the suggested themes or propose your own:

  • Virtual BRC Helpdesk
  • Automated Workflow Generation and Execution
  • Automated Knowledge Extraction and Curation
  • Assign Functions to Uncharacterized Genes
  • Outbreak Monitoring and Tracking
  • Virtual AI Co-scientist
  • Other (describe your innovative idea)

Team Information

Team Name: [Your team name]

Team Lead(s):

  • Name: [Your name]
  • Affiliation: [Your institution]
  • Email: [Your email]

Team Members (4-6 members recommended):

NameAffiliationRole / Expertise

Project Summary

[4-6 sentences describing the problem, its relevance to infectious disease research, and the AI/ML innovation your team will pursue.]

Goals and Objectives

List 2-4 measurable goals your team aims to achieve during the Codeathon:

  1. Goal 1: [Describe your first goal]
  2. Goal 2: [Describe your second goal]
  3. Goal 3 (optional): [Describe your third goal]
  4. Goal 4 (optional): [Describe your fourth goal]

Approach

Methods and AI/ML Approaches:

  • [Describe the AI/ML methods you’ll use, e.g., LLMs, pipelines, workflows]
  • [List the steps or milestones your team plans to implement]
  • [Add technical details about your approach]

Implementation Steps:

  1. [Step 1]
  2. [Step 2]
  3. [Step 3]
  4. [Step 4]

Data and Resources Required

Resource TypeSource / LinkDescription / Purpose
Datae.g., BV-BRC genomes, PubMed corpus[Describe what data you need]
Tools / Servicese.g., BV-BRC analysis tools, APIs, BV-BRC CLI[Describe what tools you’ll use]
LLMs / AI Modelse.g., GPT-4, Claude 3, Mistral Large via BV-BRC Copilot[Describe what models you need]
Compute / Storagee.g., Argonne HPC, BRC cluster nodes[Describe compute requirements]

Expected Outcomes / Deliverables

By the end of the Codeathon, we expect to deliver:

  • Prototype/Workflow: [Describe your main deliverable]
  • Code Repository: [GitHub repo with documentation]
  • Documentation: [User guides, API docs, etc.]
  • Presentation: [Demo or presentation materials]
  • Other: [Additional deliverables]

Potential Impact and Next Steps

Impact on:

  • Infectious disease research or surveillance: [How will this help?]
  • AI/ML automation and interpretability: [What advances will this bring?]
  • Public health preparedness or education: [Who will benefit?]

Next Steps After Codeathon:

  • [Follow-up activity 1]
  • [Follow-up activity 2]
  • [Integration plans with BRC resources]

Technical Support Needed

  • Datasets preloaded
  • GPU / LLM access
  • API keys
  • Mentor support
  • Other: [Specify]

Additional Comments

[Any other information, questions, or requirements for your project]